address https://github.com/pombase/allele_qc/issues/66#issuecomment-1… #123
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name: Run tests | |
on: [push, pull_request] | |
jobs: | |
test: | |
runs-on: ubuntu-20.04 | |
steps: | |
- name: checkout | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
- name: Install Python | |
uses: actions/setup-python@v1 | |
with: | |
python-version: 3.9 | |
- name: Install python dependencies | |
run: | | |
sudo apt-get install subversion -y | |
python -m pip install --upgrade pip | |
pip install poetry | |
poetry config virtualenvs.create false | |
poetry install --no-dev | |
- name: Install and set up transvar | |
run: | | |
. transvar_env_vars.sh | |
bash install_transvar_dependencies.sh | |
bash set_up_transvar.sh | |
- name: Run tests | |
# -W because of transvar | |
run: | | |
. transvar_env_vars.sh | |
python -W ignore:ResourceWarning -m unittest -v |