LaTeX tutorial for the standardization and automation of population analysis reports.
To cite this work please read and cite the article: https://doi.org/10.1002/psp4.12705
Contains LaTeX source files that hold the actual content of the report, e.g., summary.tex, introduction.tex, etc.
Contains NONMEM input data set data_set_504.dat
Contains a text file holding GNU AFFERO GENERAL PUBLIC LICENSE
Contains image file logo.png
Contains 3 compressed (tar.gz) files containing NONMEM control streams and results for base model (No. 1117171), full covariate model (No. 1117172) and final model (No. 1117173)
Contains 24 R functions needed to post-process NONMEM archives
Includes subdirectories containing tables and plots belonging to the NONMEM analysis (output created by the 3 R scripts standard.plots.R, exploratory.R and postprocessing.R)
Contains 3 R scripts standard.plots.R (functions to create goodness-of-fit plots and summary tables for NONMEM runs), exploratory.R (descriptive statistics of PK samples and subjects, concentration versus time plots of raw data), and postprocessing.R (post-processing steps for NONMEM runs)
(Hidden) configuration file for automated report compilation with latexmk
Perl script completing the action of some of the R functions under Rfunctions
Perl script that retrieves the template files from a directory and renames them according to user input. Adapt the variable $LATEXTMPLDIR as explained in the paper.
Literature database file from which the reference list will be created by BibLaTeX and biber
The main source file (document environment) in which the titlepage, approval page, textblocks, behind-of-text displays, tables, and appendix get included
Source file of the appendix
Source file of the approval page
Source file to include additional figures and tables behind the core sections of the report
Preamble, e.g., to define common macros to plot figures and tables, to define layout, fonts, page header and footer
Defines the meta information, i.e., title, subtitle, author name, reviewer name, and other variables used by the other template files
Source file of the titlepage
Definition of terms and symbols; used to create the list of acronyms and definition of terms
Example of the compiled report template