Skip to content

Commit

Permalink
update ignore
Browse files Browse the repository at this point in the history
  • Loading branch information
rui-yin committed Jul 9, 2023
1 parent 23e8ec6 commit 629a4b8
Show file tree
Hide file tree
Showing 136 changed files with 554 additions and 68 deletions.
2 changes: 2 additions & 0 deletions .gitignore
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
*.pyc
run*sh
Binary file removed alphafold/__pycache__/__init__.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/__pycache__/__init__.cpython-38.pyc
Binary file not shown.
Binary file removed alphafold/common/__pycache__/__init__.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/common/__pycache__/__init__.cpython-38.pyc
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file removed alphafold/common/__pycache__/protein.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/common/__pycache__/protein.cpython-38.pyc
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file removed alphafold/data/__pycache__/__init__.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/data/__pycache__/__init__.cpython-38.pyc
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file removed alphafold/data/__pycache__/parsers.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/data/__pycache__/parsers.cpython-38.pyc
Binary file not shown.
Binary file removed alphafold/data/__pycache__/pipeline.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/data/__pycache__/pipeline.cpython-38.pyc
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file removed alphafold/data/__pycache__/templates.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/data/__pycache__/templates.cpython-38.pyc
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file removed alphafold/data/tools/__pycache__/utils.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/data/tools/__pycache__/utils.cpython-38.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/__init__.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/__init__.cpython-38.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/all_atom.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/all_atom.cpython-38.pyc
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file removed alphafold/model/__pycache__/config.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/config.cpython-38.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/data.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/data.cpython-38.pyc
Binary file not shown.
Binary file not shown.
Binary file removed alphafold/model/__pycache__/features.cpython-38.pyc
Binary file not shown.
Binary file not shown.
Binary file removed alphafold/model/__pycache__/folding.cpython-38.pyc
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file removed alphafold/model/__pycache__/lddt.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/lddt.cpython-38.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/mapping.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/mapping.cpython-38.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/model.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/model.cpython-38.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/modules.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/modules.cpython-38.pyc
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file removed alphafold/model/__pycache__/prng.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/prng.cpython-38.pyc
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file removed alphafold/model/__pycache__/r3.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/r3.cpython-38.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/utils.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/model/__pycache__/utils.cpython-38.pyc
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file removed alphafold/model/tf/__pycache__/__init__.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/model/tf/__pycache__/__init__.cpython-38.pyc
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file removed alphafold/model/tf/__pycache__/utils.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/model/tf/__pycache__/utils.cpython-38.pyc
Binary file not shown.
Binary file removed alphafold/relax/__pycache__/__init__.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/relax/__pycache__/__init__.cpython-38.pyc
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file removed alphafold/relax/__pycache__/cleanup.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/relax/__pycache__/cleanup.cpython-38.pyc
Binary file not shown.
Binary file removed alphafold/relax/__pycache__/relax.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/relax/__pycache__/relax.cpython-38.pyc
Binary file not shown.
Binary file removed alphafold/relax/__pycache__/utils.cpython-37.pyc
Binary file not shown.
Binary file removed alphafold/relax/__pycache__/utils.cpython-38.pyc
Binary file not shown.
552 changes: 552 additions & 0 deletions changes_to_alphafold.txt

Large diffs are not rendered by default.

File renamed without changes.
File renamed without changes.
3 changes: 0 additions & 3 deletions run_af.sh

This file was deleted.

15 changes: 0 additions & 15 deletions run_af_gpu0.sh

This file was deleted.

15 changes: 0 additions & 15 deletions run_af_gpu1.sh

This file was deleted.

15 changes: 0 additions & 15 deletions run_af_gpu1_noM.sh

This file was deleted.

5 changes: 0 additions & 5 deletions run_af_nonmultimer.sh

This file was deleted.

15 changes: 0 additions & 15 deletions run_normal_afm.sh

This file was deleted.

0 comments on commit 629a4b8

Please sign in to comment.