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blinard-BIOINFO authored Jul 17, 2024
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EPIK is a program for rapid alignment-free phylogenetic placement, the successor of [RAPPAS](https://github.com/phylo42/RAPPAS).

## Installation via Bioconda
It is advised to install the package in a new environement, because our C++ dependencies are strict and may clash with other packages requiring, for instance, libboost.
We also recommend to use `mamba, which is more faster in solving environment dependencies.

It is advised to install the package in a new environment, because our C++ dependencies are strict and may clash with other packages (requiring libboost in particular).
We also recommend to use `mamba, which is faster in solving environment dependencies.
```
conda create -n epik
conda activate epik
conda config --set channel_priority strict
# note that we install both ipk (database creation) and epik (phylogenetic placement)
mamba install ipk epik
```
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