Merge tag 'v0.2.0' into ci #115
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| name: CI | |
| on: [push, pull_request] | |
| env: | |
| BUILD_TYPE: Release | |
| jobs: | |
| build-epik: | |
| name: ${{matrix.config.buildname}} | |
| runs-on: ${{matrix.config.os}} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-22.04, compiler: 'gcc', buildname: 'ubuntu-22.04-gcc'} | |
| - {os: ubuntu-22.04, compiler: 'clang', buildname: 'ubuntu-22.04-clang'} | |
| - {os: 'ubuntu-20.04', compiler: 'gcc', buildname: 'ubuntu-20.04-gcc'} | |
| - {os: 'ubuntu-20.04', compiler: 'clang', buildname: 'ubuntu-20.04-clang'} | |
| - {os: macos-13, compiler: 'clang', buildname: 'macos-13'} | |
| - {os: macos-12, compiler: 'clang', buildname: 'macos-12'} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - name: Get number of CPU cores | |
| uses: SimenB/github-actions-cpu-cores@v1 | |
| id: cpu-cores | |
| - name: (MacOS) Install dependencies | |
| if: contains(matrix.config.os, 'macos') | |
| run: | | |
| brew update | |
| brew install cmake boost zlib rapidjson libomp | |
| pip3 install click tqdm | |
| - name: (Linux) Install dependencies | |
| if: contains(matrix.config.os, 'ubuntu') | |
| run: | | |
| sudo apt update | |
| sudo apt install -yq build-essential cmake libboost-dev libboost-serialization-dev libboost-filesystem-dev libboost-iostreams-dev libboost-program-options-dev zlib1g-dev rapidjson-dev libquadmath0 python3-pip | |
| pip3 install click tqdm | |
| - name: (Linux Clang) Install Clang | |
| if: contains(matrix.config.os, 'ubuntu') && (matrix.config.compiler == 'clang') | |
| run: sudo apt install clang | |
| - name: (MacOS) Configure CMake | |
| if: contains(matrix.config.os, 'macos') | |
| run: cmake -DCMAKE_CXX_FLAGS="-L/usr/local/opt/libomp/lib -I/usr/local/opt/libomp/include" -DOpenMP_CXX_FLAGS="-Xpreprocessor -fopenmp -I/usr/local/opt/libomp/include" -DOpenMP_CXX_LIB_NAMES="omp" -DOpenMP_omp_LIBRARY="/usr/local/opt/libomp/lib/libomp.dylib" -B ${{runner.workspace}}/bin -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} | |
| - name: (Linux GCC) Configure CMake | |
| if: contains(matrix.config.os, 'ubuntu') && (matrix.config.compiler == 'gcc') | |
| run: cmake -B ${{runner.workspace}}/bin -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} | |
| - name: (Linux Clang) Configure CMake | |
| if: contains(matrix.config.os, 'ubuntu') && (matrix.config.compiler == 'clang') | |
| run: cmake -B ${{runner.workspace}}/bin -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -DC_COMPILER=clang -DCMAKE_CXX_COMPILER=clang++ -DENABLE_OMP=OFF | |
| - name: Build | |
| run: cmake --build ${{runner.workspace}}/bin --config $BUILD_TYPE -j ${{ steps.cpu-cores.outputs.count }} | |
| - name: Test build successful | |
| working-directory: ${{runner.workspace}}/bin | |
| run: | | |
| test -f ${{runner.workspace}}/bin/epik/epik-dna | |
| test -f ${{runner.workspace}}/bin/epik/epik-aa | |
| - name: Install | |
| run: sudo cmake --install ${{runner.workspace}}/bin | |
| - name: Test installation and the python wrapper | |
| run: | | |
| epik.py --help | |
| epik.py place --help | |
| - name: Test placement | |
| run: | | |
| cd tests | |
| bash test-placement.sh | |