Changed the default value of --threads to 1 #108
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: build | |
| on: [push] | |
| env: | |
| BUILD_TYPE: Release | |
| jobs: | |
| build-epik: | |
| name: ${{matrix.buildname}} | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-22.04, ubuntu-20.04, macos-13, macos-12 ] | |
| include: | |
| - os: ubuntu-22.04 | |
| buildname: 'ubuntu-22.04' | |
| triplet: x64-linux | |
| compiler: gcc_64 | |
| - os: ubuntu-20.04 | |
| buildname: 'ubuntu-20.04' | |
| triplet: x64-linux | |
| compiler: gcc_64 | |
| - os: macos-13 | |
| buildname: 'macos-13' | |
| triplet: x64-osx | |
| compiler: clang_64 | |
| - os: macos-12 | |
| buildname: 'macos-12' | |
| triplet: x64-osx | |
| compiler: clang_64 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - name: Get number of CPU cores | |
| uses: SimenB/github-actions-cpu-cores@v1 | |
| id: cpu-cores | |
| - name: (MacOS) Install dependencies | |
| if: runner.os == 'macOS' | |
| run: brew update && brew install cmake boost zlib rapidjson libomp && pip3 install click | |
| - name: (Linux) Install dependencies | |
| if: runner.os == 'Linux' | |
| run: sudo apt-get update && sudo apt-get install -yq build-essential cmake libboost-dev libboost-serialization-dev libboost-filesystem-dev libboost-iostreams-dev libboost-program-options-dev zlib1g-dev rapidjson-dev libquadmath0 python3-pip && pip3 install click | |
| - name: (MacOS) Configure CMake | |
| if: runner.os == 'macOS' | |
| run: cmake -DCMAKE_CXX_FLAGS="-L/usr/local/opt/libomp/lib -I/usr/local/opt/libomp/include" -DOpenMP_CXX_FLAGS="-Xpreprocessor -fopenmp -I/usr/local/opt/libomp/include" -DOpenMP_CXX_LIB_NAMES="omp" -DOpenMP_omp_LIBRARY="/usr/local/opt/libomp/lib/libomp.dylib" -B ${{runner.workspace}}/bin -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} | |
| - name: (Linux) Configure CMake | |
| if: runner.os == 'Linux' | |
| run: cmake -B ${{runner.workspace}}/bin -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} | |
| - name: Build | |
| run: cmake --build ${{runner.workspace}}/bin --config $BUILD_TYPE -j ${{ steps.cpu-cores.outputs.count }} | |
| - name: Test build successful | |
| working-directory: ${{runner.workspace}}/bin | |
| run: test -f ${{runner.workspace}}/bin/epik/epik-dna && test -f ${{runner.workspace}}/bin/epik/epik-aa | |
| - name: Test python script | |
| run: python3 epik.py place --help |