[CI] #96
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: CI | |
on: [push, pull_request] | |
env: | |
BUILD_TYPE: Release | |
jobs: | |
build-epik: | |
name: ${{matrix.config.buildname}} | |
runs-on: ${{matrix.config.os}} | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- {os: ubuntu-22.04, compiler: 'gcc', buildname: 'ubuntu-22.04-gcc'} | |
- {os: ubuntu-22.04, compiler: 'clang', buildname: 'ubuntu-22.04-clang'} | |
- {os: 'ubuntu-20.04', compiler: 'gcc', buildname: 'ubuntu-20.04-gcc'} | |
- {os: 'ubuntu-20.04', compiler: 'clang', buildname: 'ubuntu-20.04-clang'} | |
- {os: macos-13, compiler: 'clang', buildname: 'macos-13'} | |
- {os: macos-12, compiler: 'clang', buildname: 'macos-12'} | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v2 | |
with: | |
submodules: recursive | |
- name: Get number of CPU cores | |
uses: SimenB/github-actions-cpu-cores@v1 | |
id: cpu-cores | |
- name: (MacOS) Install dependencies | |
if: matrix.config.os == 'macOS' | |
run: | | |
brew update | |
brew install cmake boost zlib rapidjson libomp | |
pip3 install click tqdm | |
- name: (Linux GCC) Install dependencies | |
if: (matrix.config.os == 'Linux') && (matrix.config.compiler == 'gcc') | |
run: | | |
sudo apt-get update | |
sudo apt-get install -yq build-essential cmake libboost-dev libboost-serialization-dev libboost-filesystem-dev libboost-iostreams-dev libboost-program-options-dev zlib1g-dev rapidjson-dev libquadmath0 python3-pip | |
pip3 install click tqdm | |
- name: (Linux Clang) Install dependencies | |
if: (matrix.config.os == 'Linux') && (matrix.config.compiler == 'clang') | |
run: | | |
sudo apt-get update | |
sudo apt-get install -yq build-essential cmake libboost-dev libboost-serialization-dev libboost-filesystem-dev libboost-iostreams-dev libboost-program-options-dev zlib1g-dev rapidjson-dev libquadmath0 python3-pip clang++ | |
pip3 install click tqdm | |
- name: (MacOS) Configure CMake | |
if: matrix.config.os == 'macOS' | |
run: cmake -DCMAKE_CXX_FLAGS="-L/usr/local/opt/libomp/lib -I/usr/local/opt/libomp/include" -DOpenMP_CXX_FLAGS="-Xpreprocessor -fopenmp -I/usr/local/opt/libomp/include" -DOpenMP_CXX_LIB_NAMES="omp" -DOpenMP_omp_LIBRARY="/usr/local/opt/libomp/lib/libomp.dylib" -B ${{runner.workspace}}/bin -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} | |
- name: (Linux GCC) Configure CMake | |
if: (matrix.config.os == 'Linux') && (matrix.config.compiler == 'gcc') | |
run: cmake -B ${{runner.workspace}}/bin -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} | |
- name: (Linux Clang) Configure CMake | |
if: (matrix.config.os == 'Linux') && (matrix.config.compiler == 'clang') | |
run: cmake -B ${{runner.workspace}}/bin -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -DC_COMPILER=clang -DCMAKE_CXX_COMPILER=clang++ | |
- name: Build | |
run: cmake --build ${{runner.workspace}}/bin --config $BUILD_TYPE -j ${{ steps.cpu-cores.outputs.count }} | |
- name: Test build successful | |
working-directory: ${{runner.workspace}}/bin | |
run: | | |
test -f ${{runner.workspace}}/bin/epik/epik-dna | |
test -f ${{runner.workspace}}/bin/epik/epik-aa | |
- name: Install | |
run: sudo cmake --install ${{runner.workspace}}/bin | |
- name: Test installation and the python wrapper | |
run: | | |
epik.py --help | |
epik.py place --help | |
- name: Test placement | |
run: | | |
cd tests | |
bash test-placement.sh | |