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A tool with nice GUI to visualize the codon usage frequencies in whole genomes

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Genetic Plotter

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Genetic Plotter is an application with comfortable and friendly (easy-to-use) graphical user interface. The application allows to conduct some types of genetic data analysis and visualize the result. Now one method of data analysis is available. Written in Python with using PyQt5. More features will be added in future.

Screenshots of Genetic Plotter

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Features:

-Can open more then one genome file at same time

-Can make calculations with triplets and tetraplets or any other subsequences

-Can use color selector for curves in a chart

-Can use additional options for curves in a chart (count of points)

-Can save charts as images ( two formats are avaible - PNG and JPG)

Author

The tool was created by Serhii Silov. Contact e-mail: [email protected]

Citation

Genetic Plotter was used in the following paper: Silov, S., Zaburannyi, N., Anisimova, M. et al. The Use of the Rare TTA Codon in Streptomyces Genes: Significance of the Codon Context?. Indian J Microbiol 61, 24–30 (2021). https://doi.org/10.1007/s12088-020-00902-6

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A tool with nice GUI to visualize the codon usage frequencies in whole genomes

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