Repositories list

• sequenceserver

  Public
  Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

  visualizationjavascriptbioinformatics+ 7genomicssequencingblasthacktoberfestsequence-alignmentgenomics-visualizationruby

  JavaScript

  •

  GNU Affero General Public License v3.0

  •113•271•80•8•Updated Oct 29, 2024Oct 29, 2024

• SBC361-programming-in-R

  Public
  QMUL's programming in R course

  rprogrammingeducational-materials+ 1practicals

  CSS

  •11•5•14•0•Updated Oct 16, 2024Oct 16, 2024

• wurmlab.github.io

  Public
  Wurm lab website

  HTML

  •25•7•17•1•Updated Oct 2, 2024Oct 2, 2024

• genomicscourse

  Public
  For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics

  educationbioinformaticspopulation-genomics+ 4genome-analysisgenome-assemblypracticalsqmul

  HTML

  •20•12•24•1•Updated Oct 1, 2024Oct 1, 2024

• rack_nonce_middleware

  Public
  A Rack middleware to add a nonce to the CSP header and expose it to the view templates.

  Ruby

  •0•0•0•0•Updated Jul 15, 2024Jul 15, 2024

• genevalidator

  Public
  GeneValidator: Identify problems with predicted genes

  bioinformaticsquality-assurancegene-prediction

  Ruby

  •

  GNU Affero General Public License v3.0

  •18•44•7•2•Updated Mar 1, 2024Mar 1, 2024

• flo

  Public
  Same species annotation lift over pipeline.

  bioinformaticsliftovergene-prediction+ 1gff

  Ruby

  •28•95•10•1•Updated Jul 21, 2023Jul 21, 2023

• Fire_ant_viral_load

  Public
  Shell

  •0•1•0•0•Updated Jun 6, 2023Jun 6, 2023

• 2022-amel_bter_expression_nachrs

  Public
  Comparative expression analysis of nAChR subunit genes in Apis mellifera and Bombus terrestris

  Shell

  •

  GNU General Public License v3.0

  •1•1•1•0•Updated Dec 19, 2022Dec 19, 2022

• crowdCheckingTableOfContents

  Public
  R

  •1•0•0•0•Updated May 13, 2022May 13, 2022

• haplodiploid_simulations

  Public
  SLiM simulations of haplodiploid populations

  HTML

  •0•1•0•0•Updated Apr 8, 2022Apr 8, 2022

• 2021-fire-ant-social-supergene-introgression

  Public
  Introgression events analysis of Solenopsis sp. supergene.

  Shell

  •1•1•0•0•Updated Jan 24, 2022Jan 24, 2022

• CompareGenomeQualities

  Public
  Reference free comparison of genome assemblies

  Shell

  •

  GNU General Public License v3.0

  •0•5•1•0•Updated May 14, 2021May 14, 2021

• to_allmaps

  Public
  Scripts to use RADseq, RNAseq, and BioNano data with ALLMAPS for chromosomal scaffolding of genome assemblies.

  Perl

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated May 14, 2021May 14, 2021

• genevalidatorapp

  Public
  A web wrapper for GeneValidator

  JavaScript

  •

  GNU Affero General Public License v3.0

  •3•11•1•0•Updated Feb 12, 2021Feb 12, 2021

• 2019-11-allelic_bias_in_fire_ant_supergene

  Public
  HTML

  •

  GNU General Public License v3.0

  •2•1•0•0•Updated Sep 2, 2020Sep 2, 2020

• cli-boot.camp

  Public
  💻 command-line bootcamp adventure in your browser

  JavaScript

  •

  Other

  •51•0•0•0•Updated Jun 23, 2020Jun 23, 2020

• Bter_neonicotinoid_exposure_experiment

  Public
  Caste- and pesticide-specific effects of neonicotinoid pesticide exposure on gene expression in bumblebees

  R

  •

  GNU General Public License v3.0

  •2•5•0•0•Updated Mar 12, 2019Mar 12, 2019

• templates

  Public
  Templates for applications and reports.

  Makefile

  •1•2•0•0•Updated Nov 9, 2018Nov 9, 2018

• msc_assemblies

  Public
  HTML

  •0•0•0•0•Updated Nov 5, 2018Nov 5, 2018

• simulate_chromosome_length_evolution

  Public
  R

  •1•0•0•0•Updated Nov 3, 2018Nov 3, 2018

• tidbits

  Public
  Ruby

  •0•3•2•0•Updated Sep 12, 2018Sep 12, 2018

• rubyscholar

  Public
  Scrape Google Scholar Profile into a custom HTML using Ruby (Nokogiri)

  Ruby

  •

  MIT License

  •5•9•1•1•Updated Jun 12, 2018Jun 12, 2018

• BioNano-Irys-tools

  Public
  tools to work with BioNano Irys optical maps (cmaps)

  R

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Aug 16, 2017Aug 16, 2017

• afra

  Public
  Genome Annotation for the Masses

  educationcrowdsourcingcuration+ 1gene-prediction

  JavaScript

  •

  Apache License 2.0

  •21•36•36•2•Updated Jul 9, 2017Jul 9, 2017

• oswitch

  Public
  Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

  dockerdata-sciencebioinformatics+ 1virtualization

  Ruby

  •9•76•13•0•Updated Jun 28, 2017Jun 28, 2017

• Dockerfiles

  Public
  Dockerfiles

  Shell

  •

  MIT License

  •3•2•0•0•Updated Jun 25, 2017Jun 25, 2017

• NpSearch

  Public
  NpSearch: Search for Neuropeptides

  neuroscienceneuropeptidesruby+ 4fastasignal-peptidescleavage-sitesneuropeptides-precursor

  Ruby

  •

  GNU Affero General Public License v3.0

  •1•7•0•0•Updated Jan 26, 2017Jan 26, 2017

• genevalidatorappAPI

  Public
  An API for GeneValidatorApp

  HTML

  •

  MIT License

  •0•1•1•0•Updated Sep 13, 2016Sep 13, 2016

• QMUL-MSc-Programming-in-R-and-Using-Linux

  Public
  R

  •4•4•8•0•Updated Mar 22, 2016Mar 22, 2016