Repositories list

• jekyll-soybase

  Public
  SoyBase site, forked from jekyll-legumeinfo mid-2022; built with Jekyll and served on GitHub Pages

  HTML

  •

  Apache License 2.0

  •1•2•1•0•Updated Nov 14, 2024Nov 14, 2024

• parentage

  Public
  Code for deriving pedigree/parentage history, given data about individuals and parents.

  Perl

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• bioconda-recipes

  Public
  Conda recipes for the bioconda channel.

  Shell

  •

  MIT License

  •3.3k•0•0•0•Updated Jun 4, 2024Jun 4, 2024

• shiny.soybase.org

  Public
  Papers for USDA soybean project

  R

  •1•0•0•0•Updated May 30, 2024May 30, 2024

• GBrowse

  Public archive
  the Generic Genome Browser

  Perl

  •

  Other

  •37•0•0•0•Updated Apr 24, 2024Apr 24, 2024

• map-markers-to-assembly

  Public
  Given a file of marker locations in one genome, report the locations of those markers in a second genome.

  Shell

  •0•1•0•0•Updated Nov 29, 2023Nov 29, 2023

• gcv

  Public archive
  Federating genomes with love (and functional annotations => synteny)

  TypeScript

  •

  Apache License 2.0

  •10•0•0•0•Updated Jun 24, 2023Jun 24, 2023

• breedbase_dockerfile

  Public archive
  The Dockerfiles for breeDBase

  Dockerfile

  •

  MIT License

  •8•0•0•0•Updated Jun 5, 2023Jun 5, 2023

• scinet-site

  Public archive
  A prototype of the USDA-ARS Website

  HTML

  •

  Other

  •121•0•0•0•Updated May 4, 2023May 4, 2023

• GOMAP

  Public archive
  R

  •

  MIT License

  •3•0•0•0•Updated May 4, 2023May 4, 2023

• cmap

  Public archive
  A browser-based tool for the visual comparison of various maps (sequence, genetic, etc.) from any number of species.

  Perl

  •

  Other

  •2•0•0•0•Updated May 3, 2023May 3, 2023

• amigo

  Public archive
  AmiGO is the public interface for the Gene Ontology.

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •17•0•0•0•Updated Feb 8, 2023Feb 8, 2023

• web-components

  Public
  A collection of Web Components for interacting with and visualizing biological data.

  TypeScript

  •

  Apache License 2.0

  •3•0•0•0•Updated Jan 27, 2023Jan 27, 2023

• graphql-server

  Public
  A GraphQL server that supports dynamic content in the LIS Jekyll site

  JavaScript

  •

  Apache License 2.0

  •3•0•0•0•Updated Jan 27, 2023Jan 27, 2023

• gcvit

  Public archive
  CViT based tool for visualising VCF files.

  JavaScript

  •

  MIT License

  •8•0•0•0•Updated Sep 7, 2022Sep 7, 2022

• jekyll-soybase-FM

  Public archive
  New jekyll-soybase that draws on the latest stuff in jekyll-legumeinfo.

  JavaScript

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 11, 2022Apr 11, 2022

• jekyll-theme-legumeinfo

  Public
  HTML

  •

  Apache License 2.0

  •1•0•0•0•Updated Nov 14, 2021Nov 14, 2021

• DroneImageScripts

  Public archive
  OpenCV scripts

  Python

  •

  MIT License

  •4•0•0•0•Updated Feb 20, 2021Feb 20, 2021

• CuratorTools

  Public archive
  A set of curator tools designed to manage genomic datasets.

  PHP

  •

  MIT License

  •0•0•6•0•Updated Aug 28, 2020Aug 28, 2020

• pathway_tools_docker

  Public archive
  Docker files and instructions for setting up a web install of Pathway tools

  Dockerfile

  •0•0•0•0•Updated Jun 13, 2020Jun 13, 2020

• SoySNP-Names

  Public archive
  Script used to create internal SoyBase "ssID" names for SNP experiments

  Awk

  •1•0•0•0•Updated May 1, 2019May 1, 2019

• crossmap-workflow

  Public
  Workflow and script for converting genomic coordinates using MUMmer output and CrossMap

  Perl

  •3•10•1•0•Updated Sep 1, 2018Sep 1, 2018

• node-time

  Public archive
  "time.h" bindings for Node.js

  JavaScript

  •

  MIT License

  •84•0•0•0•Updated Jul 16, 2018Jul 16, 2018

• phyViz

  Public
  R

  •2•0•0•0•Updated Feb 7, 2015Feb 7, 2015