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@molbiodiv Molecular Biodiversity Group University of Würzburg

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    18 repositories

    • bcgTree

      Public
      Automatically calculate phylogenetic trees from bacterial core genes
      bioinformaticsphylogenetics
      Perl
      •
      MIT License
      •9•19•6•0•Updated Jan 12, 2024Jan 12, 2024

    • fennec

      Public
      Functional Exploration of Natural Networks and Ecological Communities
      PHP
      •
      MIT License
      •3•6•38•16•Updated Dec 10, 2022Dec 10, 2022

    • biojs-io-biom

      Public
      Parses biom files
      bioinformaticsbiojsbiom-format
      JavaScript
      •
      MIT License
      •1•2•5•2•Updated Dec 6, 2022Dec 6, 2022

    • bcdatabaser_web

      Public
      JavaScript
      •
      MIT License
      •0•1•0•0•Updated Feb 14, 2022Feb 14, 2022

    • meta-barcoding-dual-indexing

      Public
      Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach - Computational methods
      ecologymeta-barcodingits2
      Perl
      •
      MIT License
      •7•10•0•0•Updated Jan 19, 2022Jan 19, 2022

    • bcdatabaser

      Public
      A pipeline to create reference databases for arbitrary markers and taxonomic groups from NCBI data
      databasednametabarcoding
      Perl
      •
      MIT License
      •3•6•10•0•Updated Nov 10, 2021Nov 10, 2021

    • biom-conversion-server

      Public
      Conversion tool for the biom format via php webservice
      bioinformaticsbiom-format
      PHP
      •
      MIT License
      •0•1•2•0•Updated Oct 4, 2018Oct 4, 2018

    • Phinch

      Public
      Phinch is an open-source framework for visualizing biological data, funded by a grant from the Alfred P. Sloan foundation. This project represents an interdisciplinary collaboration between Pitch Interactive, a data visualization studio in Berkeley, CA, and biological researchers at UC Davis.
      PHP
      •
      GNU General Public License v3.0
      •30•1•0•0•Updated Jun 22, 2018Jun 22, 2018

    • F1_MBC

      Public
      Shell
      •0•0•0•0•Updated Apr 23, 2018Apr 23, 2018

    • fennec-cli

      Public
      Python
      •0•0•0•0•Updated Mar 21, 2018Mar 21, 2018

    • PairSampler

      Public
      R
      •0•0•0•0•Updated Mar 5, 2018Mar 5, 2018

    • 16S2Genome

      Public
      Perl
      •0•0•0•0•Updated Feb 2, 2018Feb 2, 2018

    • meta-barcoding-marker-demultiplex

      Public
      0•0•0•0•Updated Oct 23, 2017Oct 23, 2017

    • gaiatracker

      Public
      JavaScript
      •0•0•0•0•Updated Aug 10, 2017Aug 10, 2017

    • fennec-R

      Public
      R functions to the FENNEC API
      R
      •0•0•1•0•Updated Aug 4, 2017Aug 4, 2017

    • illumina-allocation-to-samplesheet

      Public
      Helper script to transform an allocation sheet into a samplesheet
      Perl
      •
      MIT License
      •0•0•0•0•Updated Apr 25, 2017Apr 25, 2017

    • Phinch-docker

      Public
      Docker container to self-host Phinch (phinch.org)
      ApacheConf
      •0•0•0•0•Updated Jan 10, 2017Jan 10, 2017

    • Blackbird

      Public
      This is Blackbird a fork of the wonderful Phinch project (phinch.org)
      CoffeeScript
      •
      BSD 2-Clause "Simplified" License
      •0•3•4•0•Updated Oct 21, 2016Oct 21, 2016