Skip to content

@cbcrg Notredame Lab

Change the repository type filter

All

    Repositories list

    56 repositories

    • deepmodeloptim

      Public
      Stochastic Testing and Input Manipulation for Unbiased Learning Systems
      Nextflow
      •
      MIT License
      •6•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • stimulus

      Public
      Stochastic Testing and Input Manipulation for Unbiased Learning Systems
      Python
      •6•0•0•0•Updated Oct 16, 2024Oct 16, 2024

    • tcoffee

      Public
      A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
      C
      •38•102•24•0•Updated Sep 13, 2024Sep 13, 2024

    • nf-class

      Public
      Wrapper around nf-core/tools to work with class-modules
      1•0•0•0•Updated Aug 30, 2024Aug 30, 2024

    • multiplesequencealign

      Public
      A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
      Nextflow
      •
      MIT License
      •11•0•0•0•Updated Aug 28, 2024Aug 28, 2024

    • class-modules

      Public
      A subset of curated nf-core/module and module templates
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Aug 22, 2024Aug 22, 2024

    • alphafold

      Public
      CBCRG fork of the open source code for AlphaFold for nf-core/proteinfold
      Python
      •
      Apache License 2.0
      •2.2k•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • reportho

      Public
      nf-core pipeline for ortholog finding and analysis
      Nextflow
      •
      MIT License
      •4•0•0•0•Updated Mar 14, 2024Mar 14, 2024

    • tcoffee.org

      Public
      Repository to host tcoffee.org website content
      CAP CDS
      •
      Apache License 2.0
      •1•0•0•0•Updated Feb 20, 2024Feb 20, 2024

    • lab_nxf_configs

      Public
      Repository to share nextflow configurations used by the lab
      Apache License 2.0
      •1•0•0•0•Updated Feb 8, 2024Feb 8, 2024

    • coordinate_projection

      Public
      Nextflow
      •1•0•0•0•Updated Jan 10, 2024Jan 10, 2024

    • TANGO1

      Public
      codes used so far for TANGO1 projext
      Nextflow
      •1•0•0•0•Updated Aug 8, 2023Aug 8, 2023

    • paralogs-nf

      Public
      Nextflow pipeline for applying the supermatrix and supertree phylogenetic reconstruction methods on paralogs datasets
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated Jun 3, 2023Jun 3, 2023

    • open-data-registry

      Public
      A registry of publicly available datasets on AWS
      Python
      •
      Apache License 2.0
      •908•0•0•0•Updated Jun 2, 2023Jun 2, 2023

    • msa-af2-nf

      Public
      Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
      Jupyter Notebook
      •
      MIT License
      •3•12•0•0•Updated Dec 20, 2022Dec 20, 2022

    • nf-phdcourse22

      Public
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Oct 25, 2022Oct 25, 2022

    • phecomp

      Public
      R
      •0•1•0•0•Updated May 11, 2022May 11, 2022

    • ampa-nf

      Public
      Fast automated prediction of protein antimicrobial regions
      nextflowpipelineprotein-antimicrobial-regions
      Perl
      •6•5•0•0•Updated Mar 15, 2022Mar 15, 2022

    • nf-phdcourse21

      Public
      Nextflow training material for CRG PhD course 2021
      Nextflow
      •
      MIT License
      •1•1•0•0•Updated Oct 19, 2021Oct 19, 2021

    • rnaseq-nf

      Public
      A proof of concept of RNAseq pipeline
      Nextflow
      •
      Mozilla Public License 2.0
      •103•0•0•0•Updated Oct 18, 2021Oct 18, 2021

    • nf-benchmark

      Public
      Shell
      •
      MIT License
      •4•1•12•0•Updated Mar 11, 2021Mar 11, 2021

    • tcoffee-nf

      Public
      A DSL2 nextflow pipeline to run T-Coffee popular modes
      Nextflow
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 18, 2021Jan 18, 2021

    • nf-phdcourse20

      Public
      Nextflow training material for CRG PhD course 2020
      Nextflow
      •
      MIT License
      •1•4•0•0•Updated Nov 11, 2020Nov 11, 2020

    • dpa-analysis

      Public
      Nextflow Pipeline for the analysis of Double Progressive Alignment (DPA)
      Jupyter Notebook
      •4•0•0•0•Updated Jan 14, 2020Jan 14, 2020

    • pergola

      Public
      A tool for the visualization and analysis of longitudinal behavioral data
      Python
      •
      GNU General Public License v3.0
      •2•5•6•0•Updated Dec 24, 2019Dec 24, 2019

    • nf-phdcourse19

      Public
      Nextflow training material for CRG PhD course 2019
      Nextflow
      •
      MIT License
      •57•10•0•0•Updated Oct 23, 2019Oct 23, 2019

    • tcoffee-server

      Public
      T-Coffee web server
      Perl
      •2•0•0•0•Updated Oct 24, 2018Oct 24, 2018

    • pergola-reproduce

      Public
      Wrapper of the three repositories reproducing Pergola paper analysis
      Dockerfile
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 30, 2018Aug 30, 2018

    • mouse-pergola-reproduce

      Public
      Mouse dataset Pergola paper analysis
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 30, 2018Aug 30, 2018

    • melanogaster-pergola-reproduce

      Public
      D. melanogaster dataset Pergola paper analysis
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 30, 2018Aug 30, 2018