Repositories list

• found-coding-for-research-r

  Public
  Lua

  •

  Other

  •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

• metagenomics

  Public
  Course materials for "Introduction to Metagenomics"

  Lua

  •

  Other

  •1•0•2•0•Updated Nov 7, 2024Nov 7, 2024

• corestats

  Public
  These materials support the Core statistics sessions, run through the Bioinformatics Training Facility at the University of Cambridge.

  statisticspython-programmingr-programming

  Python

  •

  MIT License

  •5•3•17•0•Updated Oct 25, 2024Oct 25, 2024

• software-installation

  Public
  Software installation instructions

  Lua

  •

  Other

  •0•0•2•0•Updated Oct 24, 2024Oct 24, 2024

• hpc-intro

  Public
  Practical course on running jobs on a HPC

  Shell

  •

  Other

  •13•14•14•0•Updated Oct 7, 2024Oct 7, 2024

• unix-shell

  Public
  Materials for "Introduction to Unix Shell" course.

  Lua

  •

  Other

  •7•3•11•0•Updated Oct 6, 2024Oct 6, 2024

• hpc-intro-sanger

  Public
  Introduction to HPC for Sanger DTP

  Lua

  •

  Other

  •1•2•2•0•Updated Oct 3, 2024Oct 3, 2024

• stats-glm

  Public
  statisticspython-programmingr-programming+ 1generalised-linear-models

  HTML

  •

  Other

  •1•1•3•0•Updated Oct 1, 2024Oct 1, 2024

• stats-mva

  Public
  Materials supporting the Multivariate analysis sessions

  statisticspython-programmingpca+ 4kmeans-clusteringr-programminghierarchical-clusteringmultivariate-analysis

  Python

  •

  Other

  •1•1•0•0•Updated Sep 27, 2024Sep 27, 2024

• bioinformatics-software-pipelines

  Public
  Course materials for "Managing Bioinformatics Software and Pipelines"

  Lua

  •

  Other

  •3•1•10•0•Updated Sep 25, 2024Sep 25, 2024

• stats-bbs-linear-models

  Public
  Practical materials for the NST Part II BBS Bioinformatics course

  statisticslinear-regressionundergraduate

  Python

  •

  Other

  •1•1•0•0•Updated Sep 20, 2024Sep 20, 2024

• stats-resampling

  Public
  statisticspython-programmingresampling+ 2r-programmingadvanced-stats

  Python

  •

  Other

  •0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

• visual-data-communication

  Public
  A course to learn the basics on communicating data effectively, using visualisation.

  data-visualisationr-programmingdata-communication

  Lua

  •

  Other

  •2•2•3•0•Updated Sep 20, 2024Sep 20, 2024

• stats-mixed-effects-models

  Public
  statisticslinear-mixed-effects

  Lua

  •

  Other

  •2•2•6•0•Updated Sep 19, 2024Sep 19, 2024

• bacterial-genomics

  Public
  Course materials for "Working with Bacterial Genomes"

  Python

  •

  Other

  •2•0•8•0•Updated Sep 19, 2024Sep 19, 2024

• quarto-course-template

  Public
  Lua

  •

  Other

  •2•1•9•0•Updated Sep 4, 2024Sep 4, 2024

• sars-cov-2-genomics

  Public
  Course materials for an introduction to SARS-CoV-2 sequencing data analysis

  Shell

  •

  Other

  •7•14•16•0•Updated Aug 15, 2024Aug 15, 2024

• proteomics

  Public
  Course materials for "Analysis of expression Proteomics data in R"

  R

  •

  Other

  •5•0•0•0•Updated Aug 14, 2024Aug 14, 2024

• chipseq

  Public
  ChIP-seq and ATAC-seq analysis

  R

  •

  Other

  •6•12•11•0•Updated Jun 17, 2024Jun 17, 2024

• stats-week

  Public
  Course materials for Statistical analysis and experimental design masterclass.

  statisticsexperimental-design

  Python

  •

  Creative Commons Attribution 4.0 International

  •2•1•0•0•Updated Apr 16, 2024Apr 16, 2024

• awd-pathogen-bioinformatics

  Public
  Materials for "Introduction to Cholera Genomics" course

  Shell

  •

  Other

  •1•1•9•0•Updated Jan 23, 2024Jan 23, 2024

• Dataskills-smallbytes

  Public
  Repo for short courses & trainer support

  HTML

  •0•0•0•0•Updated Nov 28, 2023Nov 28, 2023

• reproducibility-training

  Public
  Training material for Reproducible Research in R course

  HTML

  •10•0•7•1•Updated Nov 15, 2023Nov 15, 2023

• python-nerc

  Public
  Jupyter Notebook

  •

  Other

  •0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

• bulk-rnaseq

  Public
  HTML

  •11•0•0•0•Updated Oct 24, 2023Oct 24, 2023

• edu-visual-accessibility

  Public
  Lua

  •

  Other

  •0•0•1•0•Updated Oct 4, 2023Oct 4, 2023

• intro-r

  Public
  Website for this course

  HTML

  •7•2•1•0•Updated Oct 3, 2023Oct 3, 2023

• experimental-design

  Public
  Python

  •

  Other

  •1•0•3•0•Updated Aug 2, 2023Aug 2, 2023

• reproducibility-without-fuss

  Public
  Supporting information for one of the Reproducibility courses we offer

  HTML

  •

  MIT License

  •2•0•4•0•Updated Jul 24, 2023Jul 24, 2023

• dataviz-figdesign

  Public
  Introduction to Figure Design and Data Visualisation with ggplot2

  HTML

  •5•0•2•0•Updated Jul 20, 2023Jul 20, 2023