Repositories list

• GraphR

  Public
  GraphR: a probabilistic modeling framework for genomic networks incorporating sample heterogeneity.

  R

  •0•2•0•0•Updated Nov 7, 2024Nov 7, 2024

• SLAC

  Public
  R

  •

  Other

  •0•0•0•0•Updated Nov 1, 2024Nov 1, 2024

• DreameSpase

  Public
  C++

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  Other

  •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• SGR

  Public
  Spatial Graphical Regression

  R

  •0•0•0•0•Updated Jun 24, 2024Jun 24, 2024

• ultrametricMat

  Public
  The ultrametricMat is a package designed to conduct the Bayesian inference on the ultrametric matrices by the leveraging the bijection map between the ultrametric matrices and the tree space. We refer to more details to Yao et al. (2023+) Geometry-driven Bayesian Inference for Ultrametric Covariance Matrices.

  R

  •1•0•0•0•Updated Dec 26, 2023Dec 26, 2023

• rBGR

  Public
  About rBGR is an R package that implements a flexible Bayesian model to construct heterogeneous graphs under non-normal continuous data. For more details, please see Yao et al. (2023+) Robust Bayesian Graphical Regression Models for Assessing Tumor Heterogeneity in Proteomic Networks.

  R

  •0•0•0•0•Updated Nov 6, 2023Nov 6, 2023

• iPCR

  Public
  R

  •0•0•0•0•Updated Oct 20, 2023Oct 20, 2023

• GraphR_supplementary

  Public
  Supplementary Materials for GraphR

  HTML

  •0•0•0•0•Updated Aug 21, 2023Aug 21, 2023

• SPARTIN

  Public
  R

  •

  MIT License

  •0•1•0•0•Updated May 8, 2023May 8, 2023

• SpaceX

  Public
  SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics

  R

  •2•17•5•0•Updated Apr 5, 2023Apr 5, 2023

• SPARTINsupplement

  Public
  TeX

  •0•0•0•0•Updated Feb 23, 2023Feb 23, 2023

• website2022

  Public
  Updated Website

  HTML

  •0•0•0•0•Updated Aug 16, 2022Aug 16, 2022

• bayesrx.github.io

  Public
  HTML

  •0•1•0•0•Updated Jul 20, 2022Jul 20, 2022

• COVID_vulnerability_India

  Public
  Codes and data accompanying the manuscript Role of Multi-resolution Vulnerability Indices in COVID-19 spread: A Case Study in India.

  R

  •0•0•0•0•Updated May 23, 2022May 23, 2022

• RxTree

  Public
  R

  •1•1•0•0•Updated Jan 13, 2022Jan 13, 2022

• iRx

  Public
  Data and Codes for iRx Model fitting

  R

  •0•0•0•0•Updated Oct 3, 2021Oct 3, 2021

• Software

  Public
  R

  •3•1•0•0•Updated Apr 22, 2021Apr 22, 2021

• RADIOHEAD

  Public
  Radiogenomic Analysis Incorporating Tumor Heterogeneity in Imaging Through Densities

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

• DDT_ABC_MH

  Public
  R

  •0•0•0•0•Updated Aug 10, 2020Aug 10, 2020

• BayesRx_Backend

  Public
  HTML

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  MIT License

  •0•0•0•0•Updated Apr 8, 2020Apr 8, 2020

• TransPRECISE

  Public
  Personalized Network Modeling of the Pan-Cancer Patient and Cell Line Interactome

  HTML

  •1•1•0•0•Updated Apr 8, 2020Apr 8, 2020

• QUANTICO

  Public
  MATLAB

  •1•0•0•0•Updated Dec 5, 2019Dec 5, 2019