Repositories list

• ppi-variant-tracker-manuscript

  Public
  This repo contains all code needed to generate the outputs and figures for the variant tracker manuscript

  R

  •

  MIT License

  •0•3•0•0•Updated Sep 20, 2023Sep 20, 2023

• SHED

  Public
  Python

  •

  MIT License

  •1•1•3•0•Updated Aug 7, 2023Aug 7, 2023

• tracker

  Public
  Python

  •1•0•0•0•Updated May 26, 2023May 26, 2023

• NGS-Capacity-map

  Public
  Since May 2021 the PPI Data & Analytics team has been cleaning, analyzing, and visualizing data from GISAID, FIND, WHO, and Our World In Data. In collaboration with the team at FIND we have developed a series of maps that describe next-generation sequencing capacity. The main outputs were code, data repositories, and visualizations that appear o…

  next-generation-sequencinggenomic-surveillancecovid-19

  Jupyter Notebook

  •4•3•0•0•Updated Apr 11, 2023Apr 11, 2023

• ppi-output

  Public
  Public data files for third-party tools

  0•0•0•0•Updated Mar 1, 2023Mar 1, 2023

• variant-tracker-wrapper

  Public
  HTML

  •0•0•0•0•Updated Feb 7, 2023Feb 7, 2023

• subregionalcovid19

  Public
  Fork from sjbeckett/subregionalcovid19

  R

  •

  Other

  •6•0•0•1•Updated Jan 23, 2023Jan 23, 2023

• NGS-Capacity-map-1

  Public
  Since May 2021 the PPI Data & Analytics team has been cleaning, analyzing, and visualizing data from GISAID, FIND, WHO, and Our World In Data. In collaboration with the team at FIND we have developed a series of maps that describe next-generation sequencing capacity. The main outputs were code, data repositories, and visualizations that appear o…

  Jupyter Notebook

  •4•0•0•0•Updated Aug 18, 2022Aug 18, 2022

• ppi-daily-sitrep

  Public
  R

  •0•0•0•0•Updated Jul 7, 2022Jul 7, 2022

• holiday_risk_estimator

  Public
  R

  •0•0•0•0•Updated Jan 18, 2022Jan 18, 2022