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    81 repositories

    • Beta-Cell-Driven-PDAC

      Public
      Codebase for "Beta cells are essential drivers of pancreatic ductal adenocarcinoma development"
      Jupyter Notebook
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      Other
      •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

    • MIOFlow

      Public
      Jupyter Notebook
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      Other
      •4•21•2•0•Updated Jan 9, 2025Jan 9, 2025

    • ImageFlowNet

      Public
      [ICASSP 2025] ImageFlowNet: Forecasting Multiscale Image-Level Trajectories of Disease Progression with Irregularly-Sampled Longitudinal Medical Images
      pytorchuneticassptrajectory-predictionimage-predictionneural-odedisease-progressionimage-forecastingicassp2025
      Python
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      Other
      •0•9•0•0•Updated Jan 7, 2025Jan 7, 2025

    • CUTS

      Public
      [MICCAI 2024] CUTS: A Deep Learning and Topological Framework for Multigranular Unsupervised Medical Image Segmentation
      Python
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      Other
      •1•13•0•0•Updated Jan 7, 2025Jan 7, 2025

    • PHATE

      Public
      PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
      data-visualizationunsupervised-learningmanifold-learningdimensionality-reductionsingle-cell
      Python
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      Other
      •76•483•29•1•Updated Jan 6, 2025Jan 6, 2025

    • PointCloudNet

      Public
      Jupyter Notebook
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      Other
      •1•1•0•0•Updated Jan 3, 2025Jan 3, 2025

    • krishnaswamy-lab-site

      Public
      Svelte
      •0•1•0•0•Updated Dec 24, 2024Dec 24, 2024

    • DiffKillR

      Public
      [ICASSP 2025] DiffKillR: Killing and Recreating Diffeomorphisms for Cell Annotation in Dense Microscopy Images
      Python
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      Other
      •0•3•1•0•Updated Dec 21, 2024Dec 21, 2024

    • MIOFlow_conditional

      Public
      Jupyter Notebook
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      Other
      •4•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • DiffusionEMD

      Public
      Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings
      Jupyter Notebook
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      Other
      •7•35•2•0•Updated Nov 29, 2024Nov 29, 2024

    • MIOFlow_growth_rate

      Public
      Jupyter Notebook
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      Other
      •4•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • AAnet

      Public
      Archetypal Analysis network (AAnet)
      Jupyter Notebook
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      Other
      •9•31•2•1•Updated Oct 30, 2024Oct 30, 2024

    • neural-PRISM

      Public
      Multimodal latent trajectories of brain dynamics
      Other
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • GSPA-manuscript-analyses

      Public
      Learning meaningful representations of genes
      Jupyter Notebook
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      Other
      •0•6•0•0•Updated Oct 19, 2024Oct 19, 2024

    • Gene-Signal-Pattern-Analysis

      Public
      Learning meaningful representations of genes
      Jupyter Notebook
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      Other
      •0•12•1•0•Updated Oct 19, 2024Oct 19, 2024

    • SCONE

      Public
      Indication expansion through knowledge graph embeddings
      Other
      •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • LAD

      Public
      Lipschitz Anomaly Discriminator
      Python
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      Other
      •0•4•0•0•Updated Oct 3, 2024Oct 3, 2024

    • DEMaP

      Public
      Denoised Embedding Manifold Preservation
      Python
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      Other
      •4•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • h_phate_demo

      Public
      Demonstration of Hierarchical PHATE
      Python
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      Other
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • CATCH

      Public
      Learning cellular hierarchy from scRNAseq data
      Jupyter Notebook
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      Other
      •2•9•2•0•Updated Oct 3, 2024Oct 3, 2024

    • MAGIC

      Public
      MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
      Jupyter Notebook
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      GNU General Public License v2.0
      •95•349•31•1•Updated Oct 3, 2024Oct 3, 2024

    • ProtSCAPE

      Public
      Jupyter Notebook
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      Other
      •0•14•0•0•Updated Oct 3, 2024Oct 3, 2024

    • DYMAG

      Public
      Graph Differential Equation Neural Network
      Jupyter Notebook
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      Other
      •2•0•0•1•Updated Oct 3, 2024Oct 3, 2024

    • SAUCIE

      Public
      Python
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      Other
      •29•98•19•3•Updated Oct 1, 2024Oct 1, 2024

    • MELD

      Public
      Quantifying experimental perturbations at single cell resolution
      machine-learningscrna-seq-analysis
      Python
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      Other
      •9•106•10•1•Updated Sep 27, 2024Sep 27, 2024

    • PECAN

      Public
      PECAN: Persistent Condensation
      Jupyter Notebook
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      Other
      •2•9•1•0•Updated Sep 27, 2024Sep 27, 2024

    • spARC

      Public
      Denoising spatial transcriptomics data
      Jupyter Notebook
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      Other
      •1•2•0•0•Updated Sep 27, 2024Sep 27, 2024

    • MURAL

      Public
      Python
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      Other
      •0•0•0•0•Updated Sep 27, 2024Sep 27, 2024

    • phemd

      Public
      Identifying cell subpopulational differences among single-cell biospecimens
      R
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      Other
      •3•13•4•0•Updated Sep 27, 2024Sep 27, 2024

    • mfcn

      Public
      Jupyter Notebook
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      Other
      •1•0•0•0•Updated Sep 27, 2024Sep 27, 2024