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    • easel

      Public
      Sequence analysis library used by Eddy/Rivas lab code
      C
      Other
      264631Updated Oct 28, 2024Oct 28, 2024
    • hmmer

      Public
      HMMER: biological sequence analysis using profile HMMs
      C
      Other
      70317112Updated Oct 16, 2024Oct 16, 2024
    • R-scape

      Public
      RNA Structural Covariation Above Phylogenetic Expectation
      C
      Other
      2710Updated Sep 29, 2024Sep 29, 2024
    • labbib

      Public
      Lab's BibTex bibliography, and tools
      TeX
      0100Updated Aug 30, 2024Aug 30, 2024
    • HTML
      0000Updated Aug 26, 2024Aug 26, 2024
    • CSS
      0000Updated Aug 26, 2024Aug 26, 2024
    • infernal

      Public
      RNA secondary structure/sequence profiles for homology search and alignment
      C
      Other
      2410000Updated Apr 12, 2024Apr 12, 2024
    • RNA Structure-driven Covariation Above Phylogenetic Expectation (web application)
      JavaScript
      1300Updated Feb 6, 2024Feb 6, 2024
    • Infernal's web page
      HTML
      0000Updated Sep 11, 2023Sep 11, 2023
    • hmmer.org

      Public
      HMMER home page
      HTML
      0000Updated Aug 15, 2023Aug 15, 2023
    • tornado

      Public
      A general purpose parser to produce grammars of single-sequence RNA secondary structure
      C
      Other
      1100Updated Apr 29, 2023Apr 29, 2023
    • Repository to hold work on a new null model for HMMER and Infernal
      C
      BSD 3-Clause "New" or "Revised" License
      0000Updated Feb 5, 2021Feb 5, 2021
    • ssu-align

      Public
      Structural alignment of SSU rRNA sequences
      PostScript
      0430Updated May 5, 2020May 5, 2020
    • PKNOTS

      Public
      A dynamic programming algorithm for RNA pseudoknot prediction
      C
      Other
      0000Updated Jan 30, 2020Jan 30, 2020