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openproblems-bio / task_perturbation_prediction Public

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add sc data preprocessing (#77) #13

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add sc data preprocessing (#77)

add sc data preprocessing (#77) #13

Summary
Jobs
- List components to test
  
  Test (mean_rowwise_error, metrics, src/metrics/mean_rowwise_error/config.vsh.yaml, src/metrics/me...
  
  Test (mean_rowwise_correlation, metrics, src/metrics/mean_rowwise_correlation/config.vsh.yaml, sr...
  
  Test (ground_truth, control_methods, src/control_methods/ground_truth/config.vsh.yaml, src/contro...
  
  Test (mean_across_celltypes, control_methods, src/control_methods/mean_across_celltypes/config.vs...
  
  Test (mean_outcome, control_methods, src/control_methods/mean_outcome/config.vsh.yaml, src/contro...
  
  Test (sample, control_methods, src/control_methods/sample/config.vsh.yaml, src/control_methods/sa...
  
  Test (mean_across_compounds, control_methods, src/control_methods/mean_across_compounds/config.vs...
  
  Test (zeros, control_methods, src/control_methods/zeros/config.vsh.yaml, src/control_methods/zero...
  
  Test (jn_ap_op2, methods, src/methods/jn_ap_op2/config.vsh.yaml, src/methods/jn_ap_op2/, python_s...
  
  Test (lgc_ensemble_train, methods, src/methods/lgc_ensemble_train/config.vsh.yaml, src/methods/lg...
  
  Test (transformer_ensemble, methods, src/methods/transformer_ensemble/config.vsh.yaml, src/method...
  
  Test (pyboost, methods, src/methods/pyboost/config.vsh.yaml, src/methods/pyboost/, python_script,...
  
  Test (lgc_ensemble_prepare, methods, src/methods/lgc_ensemble_prepare/config.vsh.yaml, src/method...
  
  Test (nn_retraining_with_pseudolabels, methods, src/methods/nn_retraining_with_pseudolabels/confi...
  
  Test (lgc_ensemble_direct, methods, src/methods/lgc_ensemble_direct/config.vsh.yaml, src/methods/...
  
  Test (scape, methods, src/methods/scape/config.vsh.yaml, src/methods/scape/, python_script, metho...
  
  Test (lgc_ensemble_predict, methods, src/methods/lgc_ensemble_predict/config.vsh.yaml, src/method...
  
  Test (add_uns_metadata, process_dataset, src/process_dataset/add_uns_metadata/config.vsh.yaml, sr...
  
  Test (run_limma, process_dataset, src/process_dataset/run_limma/config.vsh.yaml, src/process_data...
  
  Test (filter_obs, process_dataset, src/process_dataset/filter_obs/config.vsh.yaml, src/process_da...
  
  Test (split_sc, process_dataset, src/process_dataset/split_sc/config.vsh.yaml, src/process_datase...
  
  Test (compute_pseudobulk, process_dataset, src/process_dataset/compute_pseudobulk/config.vsh.yaml...
  
  Test (filter_vars, process_dataset, src/process_dataset/filter_vars/config.vsh.yaml, src/process_...
  
  Test (convert_h5ad_to_parquet, process_dataset, src/process_dataset/convert_h5ad_to_parquet/confi...
  
  Test (bootstrap, process_dataset, src/process_dataset/bootstrap/config.vsh.yaml, src/process_data...
  
  Test (generate_id_map, process_dataset, src/process_dataset/generate_id_map/config.vsh.yaml, src/...
  
  Test (convert_kaggle_h5ad_to_parquet, process_dataset, src/process_dataset/convert_kaggle_h5ad_to...
Run details
- Usage
- Workflow file

Usage Workflow file

test / Test (ground_truth, control_methods, src/control_methods/ground_truth/config.vsh.yaml, src/contro...

test / Test (ground_truth, control_methods, src/control_methods/ground_truth/config.vsh.yaml, src/contro...

succeeded Oct 30, 2024 in 1m 51s

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