bug in workflow fixed

openproblems-bio · Oct 14, 2024 · dc2cb03 · dc2cb03
1 parent 34cfe53
commit dc2cb03
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Showing 3 changed files with 3 additions and 8 deletions.
diff --git a/src/metrics/regression_2/config.vsh.yaml b/src/metrics/regression_2/config.vsh.yaml
@@ -23,8 +23,7 @@ functionality:
       direction: input
       type: boolean
       default: true
-
-
+
 platforms:
   - type: docker
     image: ghcr.io/openproblems-bio/base_python:1.0.4

diff --git a/src/workflows/run_benchmark/config.vsh.yaml b/src/workflows/run_benchmark/config.vsh.yaml
@@ -57,10 +57,7 @@ functionality:
         - name: --normalize
           type: boolean
           required: false
-          direction: input
-
-
-
+          direction: input        
     - name: Outputs
       arguments:
         - name: "--scores"
@@ -102,7 +99,7 @@ functionality:
     - name: grn_methods/genie3
 
     - name: grn_methods/ppcor #needs docker image
-    - name: grn_methods/scgpt 
+    # - name: grn_methods/scgpt 
 
     # ---- multiomics 
     - name: grn_methods/celloracle

diff --git a/src/workflows/run_benchmark/main.nf b/src/workflows/run_benchmark/main.nf
@@ -17,7 +17,6 @@ workflow run_wf {
     genie3,
     grnboost2,
     ppcor,
-    scgpt,
     scenic,
 
     pearson_corr,