scenic+ was modified to prevent biomart issue. #195
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # name: Build | |
| # on: | |
| # push: | |
| # branches: [ 'main' ] | |
| # workflow_dispatch: | |
| # inputs: | |
| # version: | |
| # description: | | |
| # The version of the project to build. Example: `1.0.3`. | |
| # If not provided, a development build with a version name | |
| # based on the branch name will be built. Otherwise, a release | |
| # build with the provided version will be built. | |
| # required: false | |
| # jobs: | |
| # build: | |
| # uses: openproblems-bio/actions/.github/workflows/build.yml@main | |
| # with: | |
| # version: ${{ github.event.inputs.version }} | |
| name: build | |
| on: | |
| push: | |
| branches: [ 'main' ] | |
| workflow_dispatch: | |
| inputs: | |
| target_branch: | |
| description: 'Branch to deploy to. If not specified, `build-${BRANCH_NAME}` will be used.' | |
| required: false | |
| version: | |
| description: 'Version name to use for the build. If not specified, `build-${BRANCH_NAME}` will be used.' | |
| required: false | |
| jobs: | |
| # phase 1 | |
| list: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| target_branch: ${{ steps.defaults.outputs.target_branch }} | |
| version: ${{ steps.defaults.outputs.version }} | |
| component_matrix: ${{ steps.set_matrix.outputs.matrix }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: viash-io/viash-actions/setup@v6 | |
| - name: Determine version tag from branch name | |
| id: defaults | |
| run: | | |
| BRANCH_NAME=$(echo $GITHUB_REF | sed 's/refs\/heads\///') | |
| VERSION=${{ github.event.inputs.version }} | |
| if [ -z "$VERSION" ]; then | |
| VERSION="build-$BRANCH_NAME" | |
| fi | |
| echo "version=$VERSION" >> $GITHUB_OUTPUT | |
| TARGET_BRANCH=${{ github.event.inputs.target_branch }} | |
| if [ -z "$TARGET_BRANCH" ]; then | |
| TARGET_BRANCH="build/$BRANCH_NAME" | |
| fi | |
| echo "target_branch=$TARGET_BRANCH" >> $GITHUB_OUTPUT | |
| - name: Remove target folder from .gitignore | |
| run: | | |
| # allow publishing the target folder | |
| sed -i '/^target.*/d' .gitignore | |
| - uses: viash-io/viash-actions/ns-build@v6 | |
| with: | |
| config_mod: .functionality.version := '${{ steps.defaults.outputs.version }}' | |
| parallel: true | |
| - name: Deploy to target branch | |
| uses: peaceiris/actions-gh-pages@v4 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: . | |
| publish_branch: ${{ steps.defaults.outputs.target_branch }} | |
| - id: ns_list | |
| uses: viash-io/viash-actions/ns-list@v6 | |
| with: | |
| platform: docker | |
| src: src | |
| format: json | |
| - id: set_matrix | |
| run: | | |
| echo "matrix=$(jq -c '[ .[] | | |
| { | |
| "name": (.functionality.namespace + "/" + .functionality.name), | |
| "dir": .info.config | capture("^(?<dir>.*\/)").dir | |
| } | |
| ]' ${{ steps.ns_list.outputs.output_file }} )" >> $GITHUB_OUTPUT | |
| # phase 2 | |
| build: | |
| needs: list | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| packages: write | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| component: ${{ fromJson(needs.list.outputs.component_matrix) }} | |
| steps: | |
| # Remove unnecessary files to free up space. Otherwise, we get 'no space left on device.' | |
| - uses: data-intuitive/reclaim-the-bytes@v2 | |
| - uses: actions/checkout@v4 | |
| - uses: viash-io/viash-actions/setup@v6 | |
| - name: Build container | |
| uses: viash-io/viash-actions/ns-build@v6 | |
| with: | |
| config_mod: .functionality.version := '${{ needs.list.outputs.version }}' | |
| platform: docker | |
| src: ${{ matrix.component.dir }} | |
| setup: build | |
| - name: Login to container registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Push container | |
| uses: viash-io/viash-actions/ns-build@v6 | |
| with: | |
| config_mod: .functionality.version := '${{ needs.list.outputs.version }}' | |
| platform: docker | |
| src: ${{ matrix.component.dir }} | |
| setup: push |