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Cell type annotation: scGPT workflow #832

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@dorien-er dorien-er commented Jul 9, 2024

Changelog

  • Workflow for scGPT transformer-based cell type annotation
  • Minor fix to scGPT annotation module to allow for multi-processing

Issue ticket number and link

Closes #xxxx (Replace xxxx with the GitHub issue number)

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  • I have performed a self-review of my code

  • Conforms to the Contributor's guide

  • Check the correct box. Does this PR contain:

    • Breaking changes
    • New functionality
    • Major changes
    • Minor changes
    • Documentation
    • Bug fixes
  • Proposed changes are described in the CHANGELOG.md

  • CI tests succeed!

@dorien-er dorien-er marked this pull request as ready for review September 6, 2024 12:56
@dorien-er dorien-er changed the title scgpt cell type annotation workflow Cell type annotation: scGPT transformer annotation Sep 10, 2024
@dorien-er dorien-er changed the title Cell type annotation: scGPT transformer annotation Cell type annotation: scGPT workflow Sep 10, 2024
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