Code

Add LSI#552

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Merged

DriesSchaumont merged 35 commits intoopenpipelines-bio:mainopenpipelines-bio/openpipeline:mainfrom SarahOuologuem:feature/lsiSarahOuologuem/openpipeline:feature/lsiCopy head branch name to clipboardSep 25, 2024

+449-1

Commits

Commits on Sep 13, 2023

• Add LSI

  SarahOuologuem

  authored
  b4a87a0

Commits on Sep 28, 2023

• Small fixes

  SarahOuologuem

  committed
  033c2c0

• Add check

  SarahOuologuem

  committed
  95fb617

Commits on Oct 12, 2023

• Add tests

  SarahOuologuem

  committed
  c684f32

• Merge branch 'openpipelines-bio:main' into feature/lsi

  SarahOuologuem

  authored
  a4cb6cd

• Small fixes

  SarahOuologuem

  committed
  35efd42

• Merge remote-tracking branch 'origin/feature/lsi' into feature/lsi

  SarahOuologuem

  committed
  6df6d16

• Add LSI component

  SarahOuologuem

  committed
  5b91750

Commits on Oct 23, 2023

• Fix typo: obs -> obsm

  VladimirShitov

  authored
  a5e91c9

Commits on Nov 17, 2023

• Merge remote-tracking branch 'upstream/main' into feature/lsi

  rcannood

  committed
  1e74979

Commits on Nov 30, 2023

• Merge branch 'openpipelines-bio:main' into feature/lsi

  SarahOuologuem

  authored
  19d5e85

• Use pre-existing test data

  SarahOuologuem

  committed
  a5fbb3d

• Merge branch 'feature/lsi' of https://github.com/SarahOuologuem/openpipeline into feature/lsi

  SarahOuologuem

  committed
  07c478e

• Add author yaml

  SarahOuologuem

  committed
  4b6b8da

Commits on Jan 9, 2024

• fix yaml

  rcannood

  committed
  e0f681d

• Merge remote-tracking branch 'upstream/main' into feature/lsi

  rcannood

  committed
  1703bf9

Commits on Aug 27, 2024

• Add a layer and HVGs to the file to fix tests

  VladimirShitov

  committed
  ee9d22c

• Add missing dependencies for h5py

  VladimirShitov

  committed
  3b8ec87

Commits on Aug 30, 2024

• Merge remote-tracking branch 'upstream/main' into feature/lsi

  DriesSchaumont

  committed
  23458b0

• Update for viash 0.9.0-RC7

  DriesSchaumont

  committed
  e54481e

Commits on Sep 17, 2024

• Merge test setup instead of manual writing

  Show description for a3a1c1a
  

  VladimirShitov

  and

  DriesSchaumont

  authored
  a3a1c1a

• Import setting up logger

  Show description for 5822a35
  

  VladimirShitov

  and

  DriesSchaumont

  authored
  5822a35

• Add myself to contributors

  VladimirShitov

  committed
  97c06e1

• Add min to the number of components

  VladimirShitov

  committed
  07bc90c

• Change the default of varm_output to lowercase "lsi"

  VladimirShitov

  committed
  5827b55

• Add PR number for the LSI component

  VladimirShitov

  committed
  fe1759b

• Use run_component to run tests

  Show description for 8df14c7
  

  VladimirShitov

  and

  DriesSchaumont

  authored
  8df14c7

• Fix indentation

  Show description for 8fcb746
  

  VladimirShitov

  and

  DriesSchaumont

  authored
  8fcb746

• Change "LSI" in varm to lowercase acc to the new default

  VladimirShitov

  committed
  5105789

• Fix indentation

  VladimirShitov

  committed
  1731ff5

• Use run_component instead of subprocess for all tests

  VladimirShitov

  committed
  214833d

• Update muon

  Show description for 5bcd79c
  

  VladimirShitov

  and

  DriesSchaumont

  authored
  5bcd79c

• Update python to 3.11

  Show description for b598e19
  

  VladimirShitov

  and

  DriesSchaumont

  authored
  b598e19

Commits on Sep 25, 2024

• Update CHANGELOG

  DriesSchaumont

  committed
  c5ad8d3

• Merge branch 'main' into feature/lsi

  DriesSchaumont

  authored
  2870f95