Full-stack tests #523
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name: "Full-stack tests" | |
on: | |
push: | |
workflow_dispatch: | |
schedule: | |
- cron: "50 3/6 * * *" | |
defaults: | |
run: | |
shell: bash -leo pipefail {0} {0} | |
jobs: | |
test: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: | |
- "ubuntu-latest" | |
- "macos-latest" # this is probably macos-14 | |
python-version: | |
- "3.10" | |
- "3.11" | |
- "3.12" | |
env: | |
OE_LICENSE: ${{ github.workspace }}/oe_license.txt | |
PYTEST_ARGS: -x -n logical --rootdir=. --durations=20 | |
steps: | |
- uses: actions/checkout@v4 | |
# Each of these checkouts can be done on a feature branch | |
# https://github.com/actions/checkout#checkout-a-different-branch | |
# Only check out the repos whose tests directly run; development | |
# installs of other packages are brought in via pip via micromamba | |
- name: Checkout Interchange | |
uses: actions/checkout@v4 | |
with: | |
repository: openforcefield/openff-interchange | |
path: openff-interchange | |
fetch-depth: 0 | |
fetch-tags: true | |
- name: Checkout QCSubmit | |
uses: actions/checkout@v4 | |
with: | |
repository: openforcefield/openff-qcsubmit | |
path: openff-qcsubmit | |
fetch-depth: 0 | |
- name: Checkout OpenFF Fragmenter | |
uses: actions/checkout@v4 | |
with: | |
repository: openforcefield/openff-fragmenter | |
path: openff-fragmenter | |
- name: Checkout OpenFF Units | |
uses: actions/checkout@v4 | |
with: | |
repository: openforcefield/openff-units | |
path: openff-units | |
- name: Checkout SMIRNOFF plugins | |
uses: actions/checkout@v4 | |
with: | |
repository: openforcefield/smirnoff-plugins | |
path: smirnoff-plugins | |
- name: Checkout OpenFF Utilities | |
uses: actions/checkout@v4 | |
with: | |
repository: openforcefield/openff-utilities | |
path: openff-utilities | |
- name: Set up conda environment | |
uses: mamba-org/setup-micromamba@v2 | |
with: | |
environment-file: devtools/conda-envs/full-stack.yaml | |
create-args: python=${{ matrix.python-version }} | |
- name: Make oe_license.txt file from GH org secret "OE_LICENSE" | |
env: | |
OE_LICENSE_TEXT: ${{ secrets.OE_LICENSE }} | |
run: echo "${OE_LICENSE_TEXT}" > ${OE_LICENSE} | |
- name: Install most recent development versions | |
run: | | |
python -m pip install -e \ | |
openff-interchange/ \ | |
openff-interchange/plugins/ \ | |
openff-qcsubmit/ \ | |
openff-units/ \ | |
openff-utilities/ \ | |
smirnoff-plugins/ | |
pip list | |
- name: Run 'everything all at once' tests | |
run: | | |
python -m pytest $PYTEST_ARGS -m "not leaky" \ | |
smirnoff-plugins/smirnoff_plugins/_tests/ \ | |
openff-utilities/openff/utilities/_tests/ \ | |
openff-interchange/openff/interchange/_tests/ \ | |
--ignore=openff-interchange/openff/interchange/_tests/unit_tests/components/test_packmol.py | |
- name: Run QC-adjacent tests | |
run: | | |
python -m pytest $PYTEST_ARGS \ | |
openff-qcsubmit/openff/qcsubmit/_tests/ \ | |
--ignore=openff-qcsubmit/openff/qcsubmit/_tests/test_submissions.py | |
- name: Run NAGL tests via pyargs | |
if: matrix.os == 'FOOBAR' | |
run: | | |
python -m pytest -nauto --pyargs "openff.nagl" |