v3.2.0

What's Changed

• TASK-2306 - Family index error is raised when variant-secondary-sample-index is run for non-family samples by @j-coll in #2406
• TASK-5668 - Linked file not shown under sample when retrieving an Individual by @pfurio in #2409
• TASK-5716 - Renaming a file is not reflected on the list of files contained by samples by @pfurio in #2410
• TASK-5796 - Replace status.name indexes for status.id by @pfurio in #2423
• TASK-6007 - OpenCGA tests fails by @j-coll in #2426
• TASK-5563 - Secondary sample index and CellBase issue - NotPresentExceptionConsequenceTypeMixinConsequenceTypeConverter error by @j-coll in #2417
• Task 5603 Exomiser: Single sample Case run as trio family by @jtarraga in #2425
• TASK-5858 - Fix alignment and coverage index analyses in blob storage by @jtarraga in #2416
• TASK-5878 - Unable to filter by dbSNP (rsIds) and HGVS id in variant browser by @j-coll in #2427
• TASK-6082 - Fix pom.xml to include the src/test/resources folder by @jtarraga in #2433
• TASK-5877 - Accept non-normalized variant ID filtering by variant by @j-coll in #2418
• TASK-5876 - Outdated variant stats are not returned by @j-coll in #2431
• TASK-6117 - Fix JUnit VariantOperationsTest:testCellbaseConfigure test by @jtarraga in #2435
• TASK-6183 - Email can't be used as a userId by @pfurio in #2441
• TASK-6172 - Improve HGVS queries by @imedina in #2440
• TASK-6201 - Outdated variant stats of running operations are not returned by @j-coll in #2445
• TASK-5932 - Format filter autocomplete is broken "The results could not be loaded" by @pfurio in #2436
• TASK-5535 - "Unlink file" action does not remove files from ClinicalAnalysis or relatedFiles by @pfurio in #2437
• TASK-6231 - Port Patch 1.10.4.1 -> 1.10.5 by @juanfeSanahuja in #2448
• TASK-464 - Login - Forgot Password option by @juanfeSanahuja in #2439
• TASK-6240 - Symbolic inversions not indexed during data load by @j-coll in #2450
• TASK-6005 - Error loading variants : "Row length 45522 is > 32767" by @j-coll in #2449
• TASK-5888 - REST Error : 414 URI too large and 431 Header too large by @j-coll in #2443
• TASK-6256 - Main OpenCGA v3.0.0 migration loses track of previous migration executions by @pfurio in #2452
• TASK-6078 - Concurrent variant-index from same sample without --load-multi-file-data by @j-coll in #2442
• TASK-5980 - REST Admin - Endpoint GET /admin/users/search only allowed for opencga user, not for organization admin/owner by @pfurio in #2438
• TASK-6305 - Error executing migrations. "requires additional parameters and need to be run manually." by @j-coll in #2456
• TASK-6302 - Improve clients auto-generation process by @j-coll in #2455
• TASK-6281 - Port Patch 2.0.0.1 -> 2.2.0 by @juanfeSanahuja in #2464
• TASK-6357 - Port Patch 1.10.5 -> 2.2.0 by @juanfeSanahuja in #2463
• TASK-4970 - New CI/CD should be triggered when a PR is approved for OpenCGA repository by @juanfeSanahuja in #2467
• TASK-6322 - Study admins should be able to update Project by @pfurio in #2458
• TASK-5979 - Automatize validation of SSO with CAS for OpenCGA Enterprise 2.x.x by @pfurio in #2461
• TASK-6413 - Allow migrations from 3.0.0.1 to 3.2.x by @pfurio in #2470
• TASK-6013 - Extend User Management capabilities by @pfurio in #2432
• TASK-6089 - Automation: Optimise Job management by @pfurio in #2476
• TASK-6345 - Cohort and sample double association is missing by @pfurio in #2472
• TASK-5960 - Update python client log-in to include organization parameter by @dapregi in #2468
• TASK-6266 - OpenCGA-Storage test failed on develop branch by @j-coll in #2481
• TASK-6522 - NoSuchMethodError okhttp3 in opencga-enterprise by @j-coll in #2483

Full Changelog: v3.1.0...v3.2.0