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CellBase v4.0.0 Stable Release
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@javild javild released this 27 Sep 16:28
· 3450 commits to develop since this release
v4.0.0
c9f6dc4
  • Data:
    • upgraded to ENSEMBL 82
    • new sources: HPO, GERP++, Gene Expression Atlas, GoNL, EXaC, UK10K, 1kG phase 3, ESP
  • Completely new Java DB Adaptor API
  • REST API:
    • Improvements over available methods and new end points
    • Comprehensively documented. API specification available through the Swagger interface
  • Much more (and better) documentation at the GitHub wiki
  • Major tests improvements
  • New Variant data model used to store and handle ENSEMBL variation data - standardizes variant handling within OpenCB
  • Major improvements on variant annotation:
    • Complete refactoring of the variant annotation code
    • New Variant Annotation data model
    • New annotation data: GERP++, CADD, UniProt, InterPro, population frequencies from GoNL, EXaC, UK10K, 1kG phase 3, ESP
  • Many performance improvements, bug fixes and code clean ups
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