Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

NTR Thalamus #3432

Open
wants to merge 3 commits into
base: master
Choose a base branch
from
Open

NTR Thalamus #3432

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
cfa8b75
NTR Thalamus
AvolaAmg Nov 22, 2024
8f56e43
NTR-Thalamus
AvolaAmg Nov 22, 2024
c5e2e57
Merge branch 'master' into NTR-Thalamus
AvolaAmg Nov 25, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
14 changes: 11 additions & 3 deletions src/ontology/uberon-edit.obo
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -45,9 +45,6 @@ synonymtypedef: PENDING_REVIEW "expert consultation and attribution required"
synonymtypedef: SENSU "taxonomic disambiguation"
synonymtypedef: SYSTEMATIC "a systematic synonym used as the base name for design patterns"
default-namespace: uberon
idspace: EFO http://www.ebi.ac.uk/efo/EFO_
idspace: NIF_Subcellular http://www.neurolex.org/wiki/
idspace: NIFEXT http://uri.neuinfo.org/nif/nifstd/nifext_
treat-xrefs-as-equivalent: AEO
treat-xrefs-as-equivalent: BILA
treat-xrefs-as-equivalent: BSPO
Expand Down Expand Up @@ -34654,6 +34651,7 @@ xref: VHOG:0000657
xref: Wikipedia:Thalamus
xref: ZFA:0001215
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:8800001 ! thalamus
relationship: contributes_to_morphology_of UBERON:0001894 ! diencephalon
relationship: in_lateral_side_of UBERON:0010225 {source="FMA-abduced-lr"} ! thalamic complex
relationship: mutually_spatially_disjoint_with UBERON:0001898 {source="ABA"} ! hypothalamus
Expand Down Expand Up @@ -160184,6 +160182,7 @@ synonym: "medullary layers of thalamus" RELATED [Wikipedia:Medullary_laminae_of_
xref: BAMS:Lam.med.thal
xref: Wikipedia:Medullary_laminae_of_thalamus
is_a: UBERON:0014531 ! white matter lamina of diencephalon
is_a: UBERON:8800001 ! thalamus
relationship: part_of UBERON:0010225 ! thalamic complex

[Term]
Expand Down Expand Up @@ -163412,6 +163411,7 @@ xref: TAO:0007010
xref: XAO:0004301
xref: ZFA:0007010
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:8800001 ! thalamus
relationship: part_of UBERON:0010225 ! thalamic complex
property_value: external_definition "Part of the forebrain that is ventral to the ventral thalamus and dorsal to the preoptic area. See page 44 of the Atlas of Early Zebrafish Brain Development[ZFIN:curator]." xsd:string {source="ZFIN:curator"}

Expand Down Expand Up @@ -224725,6 +224725,14 @@ relationship: dc-contributor https://orcid.org/0009-0005-7919-4905
relationship: part_of UBERON:0001043 ! esophagus
property_value: dcterms-date "2024-11-14T15:00:21Z" xsd:dateTime

[Term]
id: UBERON:8800001
name: thalamus
def: "The thalamus is composed by two grey matter structure of the diencephalon one in each hemisphere. It is located in the center of the brain, above the mesencephalon and the midbrain. The thalamus is a relay center for sensory and motor informations. It is composed of 50–60 nuclei that project to specific cortical areas, each nucleus can receive inputs from multiple cortical regions, creating feedback loops that enhance relevant signals while suppressing irrelevant ones. The organisation of thalamic afferents and efferents is contralateral, influencing both sensory and motor functions." [PMID:12192499, PMID:26618760, PMID:28450543, PMID:31194341]
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Add species qualification on details - e.g. in primates it is compose of 50-60 nuclei...

is_a: UBERON:0010225 ! thalamic complex
relationship: dc-contributor https://orcid.org/0000-0002-0098-8958
property_value: dcterms-date "2024-11-22T15:28:30Z" xsd:dateTime

[Term]
id: UBERON:8850000
name: lumen of pulmonary alveolus
Expand Down
Loading
Loading