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Release 2023-03-15 (#2841)
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* bridge files and diff

* artefacts

---------

Co-authored-by: Anita Caron <[email protected]>
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Anita Caron and anitacaron authored Mar 15, 2023
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-aao.obo
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ontology: uberon/bridge/cl-bridge-to-aao
data-version: 2023-02-14
data-version: 2023-03-15
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "CL bridge to aao" xsd:string
property_value: dc-description "Equivalence axioms between AAO and CL. Note that AAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-aao.owl
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xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao/2023-02-14/uberon/bridge/cl-bridge-to-aao.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao/2023-03-15/uberon/bridge/cl-bridge-to-aao.owl"/>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Erik Segerdell</dc:contributor>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paula Mabee</dc:contributor>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-aeo.obo
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ontology: uberon/bridge/cl-bridge-to-aeo
data-version: 2023-02-14
data-version: 2023-03-15
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI

[Term]
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-aeo.owl
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xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aeo.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aeo/2023-02-14/uberon/bridge/cl-bridge-to-aeo.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aeo/2023-03-15/uberon/bridge/cl-bridge-to-aeo.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>

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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-bila.obo
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ontology: uberon/bridge/cl-bridge-to-bila
data-version: 2023-02-14
data-version: 2023-03-15
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI

[Typedef]
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-bila.owl
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xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila/2023-02-14/uberon/bridge/cl-bridge-to-bila.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila/2023-03-15/uberon/bridge/cl-bridge-to-bila.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>

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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-bspo.obo
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ontology: uberon/bridge/cl-bridge-to-bspo
data-version: 2023-02-14
data-version: 2023-03-15
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI

[Typedef]
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-bspo.owl
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xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo/2023-02-14/uberon/bridge/cl-bridge-to-bspo.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo/2023-03-15/uberon/bridge/cl-bridge-to-bspo.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>

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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-caro.obo
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ontology: uberon/bridge/cl-bridge-to-caro
data-version: 2023-02-14
data-version: 2023-03-15
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI

[Term]
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-caro.owl
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xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro/2023-02-14/uberon/bridge/cl-bridge-to-caro.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro/2023-03-15/uberon/bridge/cl-bridge-to-caro.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>

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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-dhba.obo
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ontology: uberon/bridge/cl-bridge-to-dhba
data-version: 2023-02-14
data-version: 2023-03-15
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI

[Term]
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-dhba.owl
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xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-dhba.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-dhba/2023-02-14/uberon/bridge/cl-bridge-to-dhba.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-dhba/2023-03-15/uberon/bridge/cl-bridge-to-dhba.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>

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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-efo.obo
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ontology: uberon/bridge/cl-bridge-to-efo
data-version: 2023-02-14
data-version: 2023-03-15
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI

[Term]
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-efo.owl
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xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-efo.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-efo/2023-02-14/uberon/bridge/cl-bridge-to-efo.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-efo/2023-03-15/uberon/bridge/cl-bridge-to-efo.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>

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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-ehdaa.obo
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ontology: uberon/bridge/cl-bridge-to-ehdaa
data-version: 2023-02-14
data-version: 2023-03-15
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI

[Typedef]
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-ehdaa.owl
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xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa/2023-02-14/uberon/bridge/cl-bridge-to-ehdaa.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa/2023-03-15/uberon/bridge/cl-bridge-to-ehdaa.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>

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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-ehdaa2.obo
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ontology: uberon/bridge/cl-bridge-to-ehdaa2
data-version: 2023-02-14
data-version: 2023-03-15
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "CL bridge to ehdaa2" xsd:string
property_value: dc-description "Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA" xsd:string
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-ehdaa2.owl
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xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2/2023-02-14/uberon/bridge/cl-bridge-to-ehdaa2.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2/2023-03-15/uberon/bridge/cl-bridge-to-ehdaa2.owl"/>
<dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Jonathan Bard</dc:contributor>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>
<dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA</dc:description>
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-emapa.obo
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ontology: uberon/bridge/cl-bridge-to-emapa
data-version: 2023-02-14
data-version: 2023-03-15
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "CL bridge to emapa" xsd:string
property_value: dc-description "Taxonomic equivalence axioms between EMAPA (abstract developmental mouse) and CL" xsd:string
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-emapa.owl
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xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa/2023-02-14/uberon/bridge/cl-bridge-to-emapa.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa/2023-03-15/uberon/bridge/cl-bridge-to-emapa.owl"/>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Anne Niknejad</dc:creator>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Aurelie Comte</dc:creator>
<dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-ev.obo
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ontology: uberon/bridge/cl-bridge-to-ev
data-version: 2023-02-14
data-version: 2023-03-15
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI

[Term]
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2 changes: 1 addition & 1 deletion src/ontology/bridge/cl-bridge-to-ev.owl
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xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ev.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ev/2023-02-14/uberon/bridge/cl-bridge-to-ev.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ev/2023-03-15/uberon/bridge/cl-bridge-to-ev.owl"/>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
</owl:Ontology>

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80 changes: 76 additions & 4 deletions src/ontology/bridge/cl-bridge-to-fbbt.obo
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@@ -1,5 +1,5 @@
ontology: uberon/bridge/cl-bridge-to-fbbt
data-version: 2023-02-14
data-version: 2023-03-15
property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
property_value: dc-title "CL bridge to fbbt" xsd:string
property_value: dc-description "Taxonomic equivalence axioms between the drosophila anatomy ontology and CL. Note that currently CL focuses on chordate anatomy so there are only a minimal set of equivalencies for high level classes. In future CL may bridge via the arthropod anatomy ontology" xsd:string
Expand Down Expand Up @@ -110,6 +110,18 @@ property_value: IAO:0000589 "sensory neuron (drosophila)" xsd:string
intersection_of: CL:0000101 ! sensory neuron
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00007173 !
property_value: IAO:0000589 "cholinergic neuron (drosophila)" xsd:string
intersection_of: CL:0000108 ! cholinergic neuron
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00004101 !
property_value: IAO:0000589 "peptidergic neuron (drosophila)" xsd:string
intersection_of: CL:0000110 ! peptidergic neuron
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00005128 !
property_value: IAO:0000589 "pioneer neuron (drosophila)" xsd:string
Expand All @@ -122,12 +134,24 @@ property_value: IAO:0000589 "glial cell (drosophila)" xsd:string
intersection_of: CL:0000125 ! glial cell
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00005130 !
property_value: IAO:0000589 "neuroendocrine cell (drosophila)" xsd:string
intersection_of: CL:0000165 ! neuroendocrine cell
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00005074 !
property_value: IAO:0000589 "muscle cell (drosophila)" xsd:string
intersection_of: CL:0000187 ! muscle cell
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00003360 !
property_value: IAO:0000589 "flight muscle cell (drosophila)" xsd:string
intersection_of: CL:0000196 ! flight muscle cell
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00005412 !
property_value: IAO:0000589 "gamete (drosophila)" xsd:string
Expand Down Expand Up @@ -177,9 +201,9 @@ intersection_of: CL:0000374 ! trichogen cell
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00005130 !
property_value: IAO:0000589 "neurosecretory neuron (drosophila)" xsd:string
intersection_of: CL:0000381 ! neurosecretory neuron
id: FBbt:00005173 !
property_value: IAO:0000589 "thecogen cell (drosophila)" xsd:string
intersection_of: CL:0000380 ! thecogen cell
intersection_of: part_of NCBITaxon:7227

[Term]
Expand Down Expand Up @@ -236,6 +260,12 @@ property_value: IAO:0000589 "scolopidial ligament cell (drosophila)" xsd:string
intersection_of: CL:0000407 ! scolopidial ligament cell
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00007108 !
property_value: IAO:0000589 "imaginal disc cell (drosophila)" xsd:string
intersection_of: CL:0000429 ! imaginal disc cell
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00004903 !
property_value: IAO:0000589 "follicle stem cell (drosophila)" xsd:string
Expand Down Expand Up @@ -290,6 +320,12 @@ property_value: IAO:0000589 "follicle cell of egg chamber (drosophila)" xsd:stri
intersection_of: CL:0000477 ! follicle cell of egg chamber
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00058020 !
property_value: IAO:0000589 "juvenile hormone secreting cell (drosophila)" xsd:string
intersection_of: CL:0000482 ! juvenile hormone secreting cell
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00005059 !
property_value: IAO:0000589 "garland cell (drosophila)" xsd:string
Expand All @@ -314,6 +350,12 @@ property_value: IAO:0000589 "border follicle cell (drosophila)" xsd:string
intersection_of: CL:0000579 ! border follicle cell
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00007228 !
property_value: IAO:0000589 "GABAergic neuron (drosophila)" xsd:string
intersection_of: CL:0000617 ! GABAergic neuron
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00004941 !
property_value: IAO:0000589 "secondary spermatocyte (drosophila)" xsd:string
Expand All @@ -326,12 +368,30 @@ property_value: IAO:0000589 "centripetally migrating follicle cell (drosophila)"
intersection_of: CL:0000671 ! centripetally migrating follicle cell
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00003686 !
property_value: IAO:0000589 "Kenyon cell (drosophila)" xsd:string
intersection_of: CL:0000673 ! Kenyon cell
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00004910 !
property_value: IAO:0000589 "interfollicle cell (drosophila)" xsd:string
intersection_of: CL:0000674 ! interfollicle cell
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00100291 !
property_value: IAO:0000589 "glutamatergic neuron (drosophila)" xsd:string
intersection_of: CL:0000679 ! glutamatergic neuron
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00005131 !
property_value: IAO:0000589 "dopaminergic neuron (drosophila)" xsd:string
intersection_of: CL:0000700 ! dopaminergic neuron
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00001690 !
property_value: IAO:0000589 "embryonic crystal cell (drosophila)" xsd:string
Expand Down Expand Up @@ -380,12 +440,24 @@ property_value: IAO:0000589 "visceral muscle cell (drosophila)" xsd:string
intersection_of: CL:0008007 ! visceral muscle cell
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00007367 !
property_value: IAO:0000589 "histaminergic neuron (drosophila)" xsd:string
intersection_of: CL:0011110 ! histaminergic neuron
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00005797 !
property_value: IAO:0000589 "Malpighian tubule stellate cell (drosophila)" xsd:string
intersection_of: CL:1000155 ! Malpighian tubule stellate cell
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00048032 !
property_value: IAO:0000589 "glycinergic neuron (drosophila)" xsd:string
intersection_of: CL:1001509 ! glycinergic neuron
intersection_of: part_of NCBITaxon:7227

[Term]
id: FBbt:00004211 !
property_value: IAO:0000589 "compound eye photoreceptor cell (drosophila)" xsd:string
Expand Down
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