Forcefully fix externally caused TC violations.

Remove the mapping between UBERON:0000435 and DMBA:16271 from the DMBA bridge. Remove from the hra_subset component the assertion that UBERON:8440041 is present_in_taxon some NCBITaxon:9606. The mapping and the assertion are bogus and violate the taxon constraints. They need to be fixed upstream (both the DMBA bridge and the HRA subset are maintained elsewhere), but until that happens we remove them from our local copies.
obophenotype · Nov 8, 2023 · 49501ee · 49501ee
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diff --git a/src/ontology/bridge/uberon-bridge-to-dmba.obo b/src/ontology/bridge/uberon-bridge-to-dmba.obo
@@ -1319,13 +1319,6 @@ intersection_of: BFO:0000050 NCBITaxon:10090 {name="anterior nucleus of hypothal
 property_value: IAO:0000589 "posterior part of anterior hypothalamic nucleus" xsd:string
 property_value: status "Verified" xsd:string {source="https://ror.org/03cpe7c52"}
 
-[Term]
-id: DMBA:16271
-intersection_of: UBERON:0000435 {name="lateral tuberal nucleus"}
-intersection_of: BFO:0000050 NCBITaxon:10090 {name="lateral tuberal nucleus"}
-property_value: IAO:0000589 "lateral tuberal nucleus" xsd:string
-property_value: status "Verified" xsd:string {source="https://ror.org/03cpe7c52"}
-
 [Term]
 id: DMBA:16308
 intersection_of: UBERON:0001894 {name="diencephalon"}

diff --git a/src/ontology/bridge/uberon-bridge-to-dmba.owl b/src/ontology/bridge/uberon-bridge-to-dmba.owl
@@ -5723,37 +5723,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/DMBA_16271 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/DMBA_16271">
-        <owl:equivalentClass rdf:nodeID="genid1129"/>
-        <obo:IAO_0000589>lateral tuberal nucleus</obo:IAO_0000589>
-        <oboInOwl:status>Verified</oboInOwl:status>
-    </owl:Class>
-    <owl:Class rdf:nodeID="genid1129">
-        <owl:intersectionOf rdf:parseType="Collection">
-            <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0000435"/>
-            <owl:Restriction>
-                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_10090"/>
-            </owl:Restriction>
-        </owl:intersectionOf>
-    </owl:Class>
-    <owl:Axiom>
-        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/DMBA_16271"/>
-        <owl:annotatedProperty rdf:resource="http://www.w3.org/2002/07/owl#equivalentClass"/>
-        <owl:annotatedTarget rdf:nodeID="genid1129"/>
-        <rdfs:label>lateral tuberal nucleus</rdfs:label>
-    </owl:Axiom>
-    <owl:Axiom>
-        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/DMBA_16271"/>
-        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#status"/>
-        <owl:annotatedTarget>Verified</owl:annotatedTarget>
-        <oboInOwl:source>https://ror.org/03cpe7c52</oboInOwl:source>
-    </owl:Axiom>
-
-
-
     <!-- http://purl.obolibrary.org/obo/DMBA_16308 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/DMBA_16308">

diff --git a/src/ontology/components/hra_subset.owl b/src/ontology/components/hra_subset.owl
@@ -14131,15 +14131,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/UBERON_8440041 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_8440041">
-        <obo:RO_0002175 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
-        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas"/>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/UBERON_8450002 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_8450002">