Skip to content

Commit

Permalink
new terms
Browse files Browse the repository at this point in the history
  • Loading branch information
@pnrobinson
pnrobinson committed Jan 27, 2024
1 parent b3835d9 commit b5b7495
Showing 1 changed file with 96 additions and 2 deletions.
98 changes: 96 additions & 2 deletions src/ontology/hp-edit.owl
View file
Original file line number Diff line number Diff line change
Expand Up @@ -18358,6 +18358,16 @@ Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000216>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000217>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000218>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000219>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000220>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000221>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000222>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000223>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000224>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000225>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000226>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000227>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000228>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000229>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0014932>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_1000009>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/HP_0034334>))
Expand Down Expand Up @@ -46327,8 +46337,8 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasBroadSynony
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/HP_0002616> "SNOMEDCT_US:251036003")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/HP_0002616> "UMLS:C0238669")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://orcid.org/0000-0002-6548-5200>) Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/hp#layperson>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0002616> "Bulge in wall of root of large artery that carries blood away from heart")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0002616> "Increased aortic root diameter")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/hp#layperson>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0002616> "Enlarged aortic root")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0002616> "Increased aortic root diameter")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0002616> "HP:0002616")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0002616> "Aortic root aneurysm")
SubClassOf(<http://purl.obolibrary.org/obo/HP_0002616> <http://purl.obolibrary.org/obo/HP_0012727>)
Expand Down Expand Up @@ -212329,9 +212339,9 @@ SubClassOf(<http://purl.obolibrary.org/obo/HP_0500001> <http://purl.obolibrary.o

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "http://www.mayoclinic.org/symptoms/anal-pain/basics/definition/sym-20050918") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0500005> "Pain in and around the anus or rectum (perianal region).")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/hp#layperson>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0500005> "Anal pain")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/hp#layperson>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0500005> "Rectal pain")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0500005> "Anorectal pain")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0500005> "Proctalgia")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/hp#layperson>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0500005> "Rectal pain")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0500005> "Anal pain")
SubClassOf(<http://purl.obolibrary.org/obo/HP_0500005> <http://purl.obolibrary.org/obo/HP_0012531>)

Expand Down Expand Up @@ -222382,6 +222392,90 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000219> "Reduced methylmalonate semialdehyde dehydrogenase activity in cultured fibroblasts")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000219> <http://purl.obolibrary.org/obo/HP_4000195>)

# Class: <http://purl.obolibrary.org/obo/HP_6000220> (Pharyngeal mass)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000220> "An abnormal enlargement or swelling localized to the pharynx (i.e., the throat, the space that connects the nose and mouth to the larynx and esophagus). The word mass is usually used at an early stage of the diagnostic workup before the precise nature of the swelling has been determined.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000220> <https://github.com/obophenotype/human-phenotype-ontology/issues/7883>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000220> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000220> "Pharyngeal mass")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000220> <http://purl.obolibrary.org/obo/HP_0033151>)

# Class: <http://purl.obolibrary.org/obo/HP_6000221> (Positive stool occult blood test)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:30725823") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000221> "The presence of hidden (occult) blood in the stool.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000221> <https://github.com/obophenotype/human-phenotype-ontology/issues/7887>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000221> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000221> "Positive fecal occult blood test")
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_6000221> "This test is commonly used for colorectal cancer screening. Blood in stool may be a sign of hemorrhoids, colorectal cancer, or another condition.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000221> "Positive stool occult blood test")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000221> <http://purl.obolibrary.org/obo/HP_0031685>)

# Class: <http://purl.obolibrary.org/obo/HP_6000222> (Painful defecation)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000222> "An unpleasant sensation characterized by physical discomfort that occurs when passing stool.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000222> <https://github.com/obophenotype/human-phenotype-ontology/issues/7888>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000222> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000222> "Pain associated with bowel movements")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000222> "Painful defecation")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000222> <http://purl.obolibrary.org/obo/HP_0012531>)

# Class: <http://purl.obolibrary.org/obo/HP_6000223> (Recent history of caustic substance ingestion)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000223> "Medical history of a recent ingestion of a caustic substance, i.e., a highly acidic or alkaline chemicals that can cause severe burns to the mouth and digestive tract when swallowed.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000223> <https://github.com/obophenotype/human-phenotype-ontology/issues/7892>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000223> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000223> "Recent history of caustic substance ingestion")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000223> <http://purl.obolibrary.org/obo/HP_4000144>)

# Class: <http://purl.obolibrary.org/obo/HP_6000224> (Delayed passage of meconium)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:10569507") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000224> "Failure to pass meconium (the first stool following birth) in the first 48 hours of life.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000224> <https://github.com/obophenotype/human-phenotype-ontology/issues/7893>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000224> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_6000224> "Failure to pass meconium combined with progressive abdominal distention, refusal to feed and vomiting of bilious intestinal contents are the classic clinical signs of intestinal obstruction in neonates. The first stool is passed within 24 hours of birth in 99 percent of healthy full-term infants and within 48 hours in all healthy full-term infants.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000224> "Delayed passage of meconium")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000224> <http://purl.obolibrary.org/obo/HP_0001197>)

# Class: <http://purl.obolibrary.org/obo/HP_6000225> (Single second heart sound)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:21250183") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000225> "The second sound can remain single throughout the respiratory cycle due to either absence of one component or to synchronous occurrence of the two components. Since the pulmonary vascular impedance increases with age, many normal patients over age 50 have a single S2 or at most a narrow physiologic split on inspiration because P2 occurs early. A single second sound, however, is usually due to inability to auscultate a relatively soft pulmonic component. Such inability is rare in healthy infants, children, and young adults and is uncommon even in older persons under good auscultatory conditions using a rigid stethoscopic diaphragm.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000225> <https://github.com/obophenotype/human-phenotype-ontology/issues/7781>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000225> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000225> "Single second heart sound")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000225> <http://purl.obolibrary.org/obo/HP_0031661>)

# Class: <http://purl.obolibrary.org/obo/HP_6000226> (Elevated aortic transvalvular pressure gradient)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:32451697") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000226> "The gradient (in this case, drop) in pressure across the aortic valve is above the upper limit of normal.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000226> <https://github.com/obophenotype/human-phenotype-ontology/issues/7782>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000226> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000226> "Elevated aortic transvalvular pressure gradient")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000226> <http://purl.obolibrary.org/obo/HP_0030964>)

# Class: <http://purl.obolibrary.org/obo/HP_6000227> (Prosthetic heart valve)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:30725672") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000227> "A past surgical history of the implanation of an artificial heart valve.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000227> <https://github.com/obophenotype/human-phenotype-ontology/issues/7787>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000227> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000227> "Prosthetic heart valve")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000227> <http://purl.obolibrary.org/obo/HP_0032443>)

# Class: <http://purl.obolibrary.org/obo/HP_6000228> (Failure to increase oxygen saturation on hyperoxia test)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:29763177") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000228> "Hyperoxia test is the initial method to distinguish critical congenital heart disease (CCHD) from pulmonary disease. The test consists in measuring an arterial blood gas at room air and 100% inspired oxygen after 10 minutes. Neonates with congenital heart disease are usually not able to increase PaO2 above 100 mm Hg during 100% oxygen administration. In patients with pulmonary disease, PaO2 generally increased greater than or equal to 100 mm Hg with 100% oxygen as ventilation-perfusion discrepancies are overcome. A positive result indicates the cardiac origin and further cardiac workup is indicated to rule out CCHD.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000228> <https://github.com/obophenotype/human-phenotype-ontology/issues/7789>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000228> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000228> "Failure to increase oxygen saturation on hyperoxia test")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000228> <http://purl.obolibrary.org/obo/HP_0011025>)

# Class: <http://purl.obolibrary.org/obo/HP_6000229> (High-set nipples)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000229> "Placement of the nipples at a higher than normal location.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000229> <https://github.com/obophenotype/human-phenotype-ontology/issues/7792>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000229> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000229> "High-set nipples")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000229> <http://purl.obolibrary.org/obo/HP_0004404>)


SubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/BFO_0000050>) <http://purl.obolibrary.org/obo/RO_0002314>)
)

0 comments on commit b5b7495

Please sign in to comment.