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new terms
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@pnrobinson
pnrobinson committed Dec 14, 2023
1 parent 27dff49 commit 78c39d3
Showing 1 changed file with 52 additions and 7 deletions.
59 changes: 52 additions & 7 deletions src/ontology/hp-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -18103,6 +18103,11 @@ Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000016>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000017>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000018>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000019>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000020>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000021>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000022>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000023>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000024>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0014932>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_1000009>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/HP_0034334>))
Expand Down Expand Up @@ -27665,8 +27670,6 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/hp#layperson>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0000745> "Lack of motivation")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/hp#layperson>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0000745> "Lacking in initiative")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/hp#layperson>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0000745> "Lacks initiative")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0000745> "Psychomotor retardation")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0000745> "Psychomotor slowing")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0000745> "HP:0000745")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0000745> "Diminished motivation")
EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0000745> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000911> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/NBO_0000233>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
Expand Down Expand Up @@ -154707,7 +154710,6 @@ AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0030955>
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0030955> "Alcohol addiction")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0030955> "Alcoholism")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0030955> "Addictive alcohol use")
SubClassOf(<http://purl.obolibrary.org/obo/HP_0030955> <http://purl.obolibrary.org/obo/HP_0030858>)
SubClassOf(<http://purl.obolibrary.org/obo/HP_0030955> <http://purl.obolibrary.org/obo/HP_5200329>)

# Class: <http://purl.obolibrary.org/obo/HP_0030956> (Abnormality of cardiovascular system electrophysiology)
Expand Down Expand Up @@ -168095,7 +168097,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/HP_0032504> <http://purl.obolibrary.o

# Class: <http://purl.obolibrary.org/obo/HP_0032505> (Hydrophobia)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0032505> "Pharyngeal spasms that are provoked by an attempt to drink.")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:12121215") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:30564365") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0032505> "The word hydrophobia has been used to describe the avoidance of drinking in the presence of hydrophobic spasms that can be observed in human rabies (described as a blockage in the throat with worsening of dyspnea). However, rarely, the same word has been used to describe panic reactions observed in a patient when offered a glass of water. This term does not refer to the latter meaning.")
AnnotationAssertion(dc:date <http://purl.obolibrary.org/obo/HP_0032505> "2019-05-23T23:03:09Z"^^xsd:dateTime)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_0032505> <https://orcid.org/0000-0001-8430-6039>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_0032505> <https://orcid.org/0000-0002-0692-412X>)
Expand All @@ -168107,7 +168109,7 @@ AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_00325
AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0032505> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_0032505> "Hydrophobia has been described as a characteristic finding in rabies, which can prevent patients from drinking despite experiencing intense thirst.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0032505> "Hydrophobia")
SubClassOf(<http://purl.obolibrary.org/obo/HP_0032505> <http://purl.obolibrary.org/obo/HP_5200232>)
SubClassOf(<http://purl.obolibrary.org/obo/HP_0032505> <http://purl.obolibrary.org/obo/HP_0002015>)

# Class: <http://purl.obolibrary.org/obo/HP_0032506> (Alien limb phenomenon)

Expand Down Expand Up @@ -176956,6 +176958,7 @@ AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_00335
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_0033543> <https://orcid.org/0000-0003-2598-6622>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_0033543> <https://orcid.org/0000-0003-4014-4490>)
AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0033543> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0033543> "Addictive tobacco use")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0033543> "Nicotine dependence")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0033543> "Addictive nicotine use")
SubClassOf(<http://purl.obolibrary.org/obo/HP_0033543> <http://purl.obolibrary.org/obo/HP_0033511>)
Expand Down Expand Up @@ -218918,7 +218921,7 @@ AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_52003
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_5200329> <https://orcid.org/0000-0003-4014-4490>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_5200329> "Excessive alcohol consumption")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_5200329> "Problematic alcohol consumption")
SubClassOf(<http://purl.obolibrary.org/obo/HP_5200329> <http://purl.obolibrary.org/obo/HP_0030082>)
SubClassOf(<http://purl.obolibrary.org/obo/HP_5200329> <http://purl.obolibrary.org/obo/HP_0030858>)

# Class: <http://purl.obolibrary.org/obo/HP_5200330> (Suicide behaviors)

Expand Down Expand Up @@ -219858,9 +219861,9 @@ SubClassOf(<http://purl.obolibrary.org/obo/HP_6000015> <http://purl.obolibrary.o
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:14636871") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:20301287") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000016> "Concentration of vitamin B12 in the blood circulation above the upper limit of normal.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000016> <https://github.com/obophenotype/human-phenotype-ontology/issues/10228>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000016> <https://orcid.org/0009-0005-6714-5727>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000016> "Elevated plasma vitamin B12 level")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000016> "Elevated serum cobalamin level")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000016> "Elevated serum vitamin B12 level")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000016> "Elevated plasma vitamin B12 level")
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_6000016> "Elevated levels of serum cobalamin may be a sign of a serious, even life-threatening, disease. Hematologic disorders like chronic myelogeneous leukemia, promyelocytic leukemia, polycythemia vera and also the hypereosinophilic syndrome can result in elevated levels of cobalamin.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000016> "Elevated circulating vitamin B12 concentration")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000016> <http://purl.obolibrary.org/obo/HP_0040126>)
Expand Down Expand Up @@ -219891,6 +219894,48 @@ AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_60000
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000019> "Anthracycline exposure")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000019> <http://purl.obolibrary.org/obo/HP_4000112>)

# Class: <http://purl.obolibrary.org/obo/HP_6000020> (Binge drinking)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000020> "A pattern of episodic heavy alcohol use characterized by the consumption of a high number of drinks per occasion.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000020> <https://github.com/obophenotype/human-phenotype-ontology/issues/10175>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000020> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_6000020> "The World Health Organization defines binge drinking (BD) based on a cut-off of six drinks (i.e., 60g of alcohol) or more per occasion. The National Institute on Alcoholism and Alcohol Abuse (NIAAA) defines BD as a pattern of drinking that brings blood alcohol concentration (BAC) levels to 0.08 g/dL, which typically occurs after 4 drinks (i.e., 56 g of alcohol) for women and 5 drinks (i.e., 70 g of alcohol) for men in about 2 hours.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000020> "Binge drinking")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000020> <http://purl.obolibrary.org/obo/HP_0030858>)

# Class: <http://purl.obolibrary.org/obo/HP_6000021> (Decreased circulating thrombopoietin concentration)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:32150607") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000021> "Concentration of thrombopoietin in the blood circulation below the lower limit of normal. Thrombopoietin is a glycoprotein hormone produced by the liver and kidney that stimulates the production and differentiation of megakaryocytes.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000021> <https://github.com/obophenotype/human-phenotype-ontology/issues/10244>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000021> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000021> "Decreased circulating thrombopoietin concentration")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000021> <http://purl.obolibrary.org/obo/HP_0003117>)

# Class: <http://purl.obolibrary.org/obo/HP_6000022> (Collagenoma)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:29445568") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000022> "A rare hamartomatous malformation characterized by the predominant proliferation of normal collagen fibers and normal, decreased, or increased elastic fibers. Collagenomas may be solitary or multiple, sporadic, acquired or inherited.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000022> <https://github.com/obophenotype/human-phenotype-ontology/issues/10245>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000022> <https://orcid.org/0000-0001-8481-3559>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000022> "Collagenoma")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000022> <http://purl.obolibrary.org/obo/HP_0100898>)

# Class: <http://purl.obolibrary.org/obo/HP_6000023> (Lack of sufficient daily physical activity)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:23798298") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000023> "Physical activity levels less than those required for optimal health and prevention of premature death.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000023> <https://github.com/obophenotype/human-phenotype-ontology/issues/10246>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000023> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000023> "physical inactivity")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000023> "Lack of sufficient daily physical activity")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000023> <http://purl.obolibrary.org/obo/HP_0032443>)

# Class: <http://purl.obolibrary.org/obo/HP_6000024> (Synesthesia)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:32114456") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000024> "A phenomenon whereby stimulation of one sensory or cognitive pathway leads to automatic, involuntary experiences in a second sensory or cognitive pathway. For instance, people with synaesthesia may experience unusual colours, tastes, and other sensations when engaged in everyday activities like reading or listening to music.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000024> <https://github.com/obophenotype/human-phenotype-ontology/issues/10247>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000024> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000024> "Synesthesia")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000024> <http://purl.obolibrary.org/obo/HP_0011446>)


SubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/BFO_0000050>) <http://purl.obolibrary.org/obo/RO_0002314>)
)

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