new terms

obophenotype · Jan 25, 2024 · 0f7c206 · 0f7c206
1 parent c64baf0
commit 0f7c206
Showing 1 changed file with 23 additions and 15 deletions.
diff --git a/src/ontology/hp-edit.owl b/src/ontology/hp-edit.owl
@@ -17318,6 +17318,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/HP_0430044>))
 Declaration(Class(<http://purl.obolibrary.org/obo/HP_0430045>))
 Declaration(Class(<http://purl.obolibrary.org/obo/HP_0430046>))
 Declaration(Class(<http://purl.obolibrary.org/obo/HP_0430047>))
+Declaration(Class(<http://purl.obolibrary.org/obo/HP_0430048>))
 Declaration(Class(<http://purl.obolibrary.org/obo/HP_0500001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/HP_0500005>))
 Declaration(Class(<http://purl.obolibrary.org/obo/HP_0500006>))
@@ -33559,7 +33560,6 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0001288> "Gait disturbances")
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/hp#layperson>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0001288> "Impaired gait")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0001288> "HP:0001288")
-AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_0001288> "If possible, this term should not be used for new annotations. Rather, a more specific term should be sought.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0001288> "Gait disturbance")
 SubClassOf(<http://purl.obolibrary.org/obo/HP_0001288> <http://purl.obolibrary.org/obo/HP_0100022>)
 
@@ -45342,24 +45342,20 @@ SubClassOf(<http://purl.obolibrary.org/obo/HP_0002512> <http://purl.obolibrary.o
 
 # Class: <http://purl.obolibrary.org/obo/HP_0002514> (Cerebral calcification)
 
-AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://orcid.org/0000-0002-0736-9199>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0002514> "The presence of calcium deposition within brain structures.")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://orcid.org/0000-0002-0736-9199>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0002514> "The presence of calcium deposition within the cerebrum.")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasAlternativeId> <http://purl.obolibrary.org/obo/HP_0002514> "HP:0002502")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasAlternativeId> <http://purl.obolibrary.org/obo/HP_0002514> "HP:0005806")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasAlternativeId> <http://purl.obolibrary.org/obo/HP_0002514> "HP:0006848")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/HP_0002514> "SNOMEDCT_US:17944005")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/HP_0002514> "UMLS:C0270685")
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://orcid.org/0000-0002-6548-5200>) Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/hp#layperson>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0002514> "Abnormal deposits of calcium in the brain")
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0002514> "Brain calcification")
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0002514> "Intracerebral calcifications")
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0002514> "Intracranial calcification")
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0002514> "Intracranial calcifications")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0002514> "HP:0002514")
-AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_0002514> "This finding can be demonstrated upon cerebral computer tomography, magnetic resonance imaging, or potentially by standard radiography of the skull.")
+AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_0002514> "This finding can be demonstrated upon cerebral computer tomography, magnetic resonance imaging, or potentially by standard radiography of the skull. The cerebrum is the largest of the five major components of the brain, which comprise the cerebrum, cerebellum, brain stem, pituitary gland, and hypothalamus.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0002514> "Cerebral calcification")
 EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0002514> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001447> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0001893>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
 SubClassOf(<http://purl.obolibrary.org/obo/HP_0002514> <http://purl.obolibrary.org/obo/HP_0002060>)
-SubClassOf(<http://purl.obolibrary.org/obo/HP_0002514> <http://purl.obolibrary.org/obo/HP_0010766>)
 SubClassOf(<http://purl.obolibrary.org/obo/HP_0002514> <http://purl.obolibrary.org/obo/HP_0034221>)
+SubClassOf(<http://purl.obolibrary.org/obo/HP_0002514> <http://purl.obolibrary.org/obo/HP_0430048>)
 
 # Class: <http://purl.obolibrary.org/obo/HP_0002515> (Waddling gait)
 
@@ -46671,7 +46667,6 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasAlternative
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasAlternativeId> <http://purl.obolibrary.org/obo/HP_0002655> "HP:0005893")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/HP_0002655> "MSH:D010009")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/HP_0002655> "UMLS:C0038015")
-AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0002655> "Spondyloepiphyseal dysplasia tarda")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0002655> "HP:0002655")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0002655> "Spondyloepiphyseal dysplasia")
 SubClassOf(<http://purl.obolibrary.org/obo/HP_0002655> <http://purl.obolibrary.org/obo/HP_0002652>)
@@ -69644,7 +69639,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/HP_0005667> <http://purl.obolibrary.o
 
 # Class: <http://purl.obolibrary.org/obo/HP_0005671> (Bilateral intracerebral calcifications)
 
-AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://orcid.org/0000-0002-0736-9199>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0005671> "Deposition of calcium salts on both sides of the brain.")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://orcid.org/0000-0002-0736-9199>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0005671> "Deposition of calcium salts on both sides of the cerebrum.")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/HP_0005671> "UMLS:C4025159")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0005671> "Bilateral intracranial calcifications")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0005671> "HP:0005671")
@@ -70448,7 +70443,7 @@ AnnotationAssertion(owl:deprecated <http://purl.obolibrary.org/obo/HP_0005848> "
 
 # Class: <http://purl.obolibrary.org/obo/HP_0005849> (Diffuse cerebral calcification)
 
-AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://orcid.org/0000-0002-0736-9199>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0005849> "Generalized deposition of calcium salts within the brain.")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://orcid.org/0000-0002-0736-9199>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0005849> "Generalized deposition of calcium salts within the cerebrum.")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/HP_0005849> "UMLS:C4025125")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0005849> "HP:0005849")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0005849> "Diffuse cerebral calcification")
@@ -77517,8 +77512,8 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0006960> "HP:0006960")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0006960> "Choroid plexus calcification")
 EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0006960> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001447> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0001886>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
-SubClassOf(<http://purl.obolibrary.org/obo/HP_0006960> <http://purl.obolibrary.org/obo/HP_0002514>)
 SubClassOf(<http://purl.obolibrary.org/obo/HP_0006960> <http://purl.obolibrary.org/obo/HP_0007376>)
+SubClassOf(<http://purl.obolibrary.org/obo/HP_0006960> <http://purl.obolibrary.org/obo/HP_0430048>)
 
 # Class: <http://purl.obolibrary.org/obo/HP_0006961> (Jerky head movements)
 
@@ -108908,8 +108903,8 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <ht
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0010513> "HP:0010513")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0010513> "Pituitary calcification")
 EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0010513> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001447> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0000007>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
-SubClassOf(<http://purl.obolibrary.org/obo/HP_0010513> <http://purl.obolibrary.org/obo/HP_0002514>)
 SubClassOf(<http://purl.obolibrary.org/obo/HP_0010513> <http://purl.obolibrary.org/obo/HP_0011747>)
+SubClassOf(<http://purl.obolibrary.org/obo/HP_0010513> <http://purl.obolibrary.org/obo/HP_0430048>)
 
 # Class: <http://purl.obolibrary.org/obo/HP_0010514> (Hyperpituitarism)
 
@@ -165989,6 +165984,8 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
 AnnotationAssertion(dc:date <http://purl.obolibrary.org/obo/HP_0032230> "2019-01-26T14:43:56Z"^^xsd:dateTime)
 AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0032230> <https://orcid.org/0000-0002-0736-9199>)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0032230> "Anti-neutrophil cytoplasmic antibody positivity")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0032230> "C-ANCA antibodies")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0032230> "Cytoplasmic antineutrophil cytoplasmic antibodies")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0032230> "Cytoplasmic antineutrophil antibody positivity")
 SubClassOf(<http://purl.obolibrary.org/obo/HP_0032230> <http://purl.obolibrary.org/obo/HP_0003453>)
 
@@ -198544,8 +198541,8 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://pu
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_0100250> "In general, meningeal calcifications are plaque-like and bilateral as seen on CT-scans.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0100250> "Meningeal calcification")
 EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0100250> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001447> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0010743>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
-SubClassOf(<http://purl.obolibrary.org/obo/HP_0100250> <http://purl.obolibrary.org/obo/HP_0002514>)
 SubClassOf(<http://purl.obolibrary.org/obo/HP_0100250> <http://purl.obolibrary.org/obo/HP_0010651>)
+SubClassOf(<http://purl.obolibrary.org/obo/HP_0100250> <http://purl.obolibrary.org/obo/HP_0430048>)
 
 # Class: <http://purl.obolibrary.org/obo/HP_0100251> (Multiple central nervous system lipomas)
 
@@ -212071,6 +212068,17 @@ AnnotationAssertion(dcterms:date <http://purl.obolibrary.org/obo/HP_0430047> "20
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0430047> "Large joint hypermobilty"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/HP_0430047> <http://purl.obolibrary.org/obo/HP_0001382>)
 
+# Class: <http://purl.obolibrary.org/obo/HP_0430048> (Intracranial calcification)
+
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:31558966") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0430048> "Intracranial calcifications refer to calcifications within the brain parenchyma or vasculature. The five major components of the brain comprise the cerebrum, cerebellum, brain stem, pituitary gland, and hypothalamus.")
+AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0430048> <https://orcid.org/0000-0002-0736-9199>)
+AnnotationAssertion(dcterms:date <http://purl.obolibrary.org/obo/HP_0430048> "2024-01-25T08:18:11Z"^^xsd:dateTime)
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/hp#plural_form>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_0430048> "Intracranial calcifications")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym> <http://purl.obolibrary.org/obo/HP_0430048> "Brain calcification")
+AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_0430048> "pineal gland, choroid plexus, habenula, falx cerebri and tentorium cerebelli")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0430048> "Intracranial calcification"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/HP_0430048> <http://purl.obolibrary.org/obo/HP_0010766>)
+
 # Class: <http://purl.obolibrary.org/obo/HP_0500001> (Body odor)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://orcid.org/0000-0002-0736-9199>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0500001> "A perceived unpleasant smell given off by the body.")
@@ -221893,7 +221901,7 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.ob
 AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000191> <https://orcid.org/0000-0002-0736-9199>)
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_6000191> "Congenital seminal vesical cysts are caused by altered development of the mesonephric (Wolffian) duct. They are often associated with abnormal development of other ipsilateral mesonephric derivatives, such as vas deferens, kidney, and ureter.")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000191> "Seminal vesicle cyst")
-SubClassOf(<http://purl.obolibrary.org/obo/HP_6000191> <http://purl.obolibrary.org/obo/HP_0000022>)
+SubClassOf(<http://purl.obolibrary.org/obo/HP_6000191> <http://purl.obolibrary.org/obo/HP_6000190>)
 
 # Class: <http://purl.obolibrary.org/obo/HP_6000192> (Silica dust exposure)