Merge pull request #183 from obophenotype/ODK-Release-November-27-2022

ODK Release November 27 2022
obophenotype · Nov 27, 2022 · af3242d · af3242d
2 parents 3d1f382 + 2c310a7
commit af3242d
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diff --git a/patterns/definitions.owl b/patterns/definitions.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/wbphenotype/patterns/definitions.owl>
-<http://purl.obolibrary.org/obo/wbphenotype/releases/2022-10-21/patterns/definitions.owl>
-Annotation(owl:versionInfo "2022-10-21"^^xsd:string)
+<http://purl.obolibrary.org/obo/wbphenotype/releases/2022-11-27/patterns/definitions.owl>
+Annotation(owl:versionInfo "2022-11-27"^^xsd:string)
 
 Declaration(Class(<http://purl.obolibrary.org/obo/CARO_0010004>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_15355>))

diff --git a/src/ontology/imports/bfo_import.owl b/src/ontology/imports/bfo_import.owl
@@ -10,9 +10,9 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:terms="http://purl.org/dc/terms/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbphenotype/imports/bfo_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-10-21/imports/bfo_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-11-27/imports/bfo_import.owl"/>
         <dc:source rdf:resource="http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl"/>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-10-21</owl:versionInfo>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-11-27</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/chebi_import.owl b/src/ontology/imports/chebi_import.owl
@@ -14,8 +14,8 @@
      xmlns:chebi4="http://purl.obolibrary.org/obo/chebi#1"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbphenotype/imports/chebi_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-10-21/imports/chebi_import.owl"/>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-10-21</owl:versionInfo>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-11-27/imports/chebi_import.owl"/>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-11-27</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/cl_import.owl b/src/ontology/imports/cl_import.owl
diff --git a/src/ontology/imports/go_import.owl b/src/ontology/imports/go_import.owl
diff --git a/src/ontology/imports/iao_import.owl b/src/ontology/imports/iao_import.owl
diff --git a/src/ontology/imports/pato_import.owl b/src/ontology/imports/pato_import.owl
diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl
diff --git a/src/ontology/imports/wbbt_import.owl b/src/ontology/imports/wbbt_import.owl
@@ -16,9 +16,9 @@
      xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbphenotype/imports/wbbt_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-10-21/imports/wbbt_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-11-27/imports/wbbt_import.owl"/>
         <dc:source rdf:resource="http://purl.obolibrary.org/obo/wbbt/releases/2022-06-13/wbbt.owl"/>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-10-21</owl:versionInfo>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-11-27</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/imports/wbls_import.owl b/src/ontology/imports/wbls_import.owl
@@ -16,9 +16,9 @@
      xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbphenotype/imports/wbls_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-10-21/imports/wbls_import.owl"/>
-        <dc:source rdf:resource="http://purl.obolibrary.org/obo/wbls/releases/2022-09-22/wbls.owl"/>
-        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-10-21</owl:versionInfo>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-11-27/imports/wbls_import.owl"/>
+        <dc:source rdf:resource="http://purl.obolibrary.org/obo/wbls/releases/2022-10-21/wbls.owl"/>
+        <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-11-27</owl:versionInfo>
     </owl:Ontology>
 
 

diff --git a/src/ontology/reports/wbphenotype-edit.owl-obo-report.tsv b/src/ontology/reports/wbphenotype-edit.owl-obo-report.tsv
@@ -3,7 +3,6 @@ ERROR	missing_label	PATO:0000956	rdfs:label
 ERROR	missing_label	RO:0000052	rdfs:label	
 ERROR	missing_label	RO:0002314	rdfs:label	
 ERROR	missing_label	WBbt:0003760	rdfs:label	
-WARN	duplicate_label_synonym	exaggerated body bends	has_exact_synonym	exaggerated body bends
 WARN	missing_definition	definition	definition	
 WARN	missing_definition	PATO:0000956	definition	
 WARN	missing_definition	RO:0000052	definition	
@@ -19,7 +18,5 @@ WARN	missing_definition	has_obo_format_version	definition
 WARN	missing_definition	has_obo_namespace	definition	
 WARN	missing_definition	has_related_synonym	definition	
 WARN	missing_definition	in_subset	definition	
-INFO	lowercase_definition	predatory behavior abnormal	definition	(Pristionchus pacificus) Animals exhibit abnormal predatory behavior, compared to controls.
-INFO	lowercase_definition	reduced predatory feeding behavior	definition	(Pristionchus pacificus) Animals exhibit reduced predatory feeding behavior, indicated by reduced predation success, compared to controls.
 INFO	missing_superclass	PATO:0000956	rdfs:subClassOf	
 INFO	missing_superclass	nematode phenotype	rdfs:subClassOf	
diff --git a/src/ontology/reports/wbphenotype.obo-obo-report.tsv b/src/ontology/reports/wbphenotype.obo-obo-report.tsv
@@ -1,17 +1,12 @@
 Level	Rule Name	Subject	Property	Value
-ERROR	multiple_definitions	characteristic of	definition	a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.
-ERROR	multiple_definitions	characteristic of	definition	a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence
 ERROR	multiple_labels	part_of	rdfs:label	part of
 ERROR	multiple_labels	part_of	rdfs:label	part_of
 ERROR	multiple_labels	has part	rdfs:label	has part
 ERROR	multiple_labels	has part	rdfs:label	has_part
 ERROR	multiple_labels	preferred_root	rdfs:label	has ontology root term
 ERROR	multiple_labels	preferred_root	rdfs:label	preferred_root
-ERROR	multiple_labels	characteristic of	rdfs:label	characteristic of
-ERROR	multiple_labels	characteristic of	rdfs:label	inheres in
 WARN	duplicate_label_synonym	part_of	IAO:0000118	part_of
 WARN	duplicate_label_synonym	has part	IAO:0000118	has_part
-WARN	duplicate_label_synonym	exaggerated body bends	has_exact_synonym	exaggerated body bends
 WARN	missing_definition	definition	definition	
 WARN	missing_definition	term replaced by	definition	
 WARN	missing_definition	description	definition	
@@ -33,10 +28,7 @@ INFO	lowercase_definition	part_of	definition	a core relation that holds between
 INFO	lowercase_definition	has part	definition	a core relation that holds between a whole and its part
 INFO	lowercase_definition	occurs in	definition	b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
 INFO	lowercase_definition	characteristic of	definition	a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.
-INFO	lowercase_definition	characteristic of	definition	a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence
 INFO	lowercase_definition	results in developmental progression of	definition	p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).
 INFO	lowercase_definition	characteristic of part of	definition	q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.
 INFO	lowercase_definition	towards	definition	q towards e2 if and only if q is a relational quality such that q inheres-in some e, and e != e2 and q is dependent on e2
-INFO	lowercase_definition	predatory behavior abnormal	definition	(Pristionchus pacificus) Animals exhibit abnormal predatory behavior, compared to controls.
-INFO	lowercase_definition	reduced predatory feeding behavior	definition	(Pristionchus pacificus) Animals exhibit reduced predatory feeding behavior, indicated by reduced predation success, compared to controls.
 INFO	missing_superclass	nematode phenotype	rdfs:subClassOf