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Merge pull request #182 from obophenotype/ODK-Release-October-21-2022
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ODK Release October 21 2022
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chris-grove authored Oct 21, 2022
2 parents b90d9cc + d41bc23 commit 752d01f
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Showing 27 changed files with 20,547 additions and 2,381 deletions.
4 changes: 2 additions & 2 deletions patterns/definitions.owl
Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/wbphenotype/patterns/definitions.owl>
<http://purl.obolibrary.org/obo/wbphenotype/releases/2022-09-21/patterns/definitions.owl>
Annotation(owl:versionInfo "2022-09-21"^^xsd:string)
<http://purl.obolibrary.org/obo/wbphenotype/releases/2022-10-21/patterns/definitions.owl>
Annotation(owl:versionInfo "2022-10-21"^^xsd:string)

Declaration(Class(<http://purl.obolibrary.org/obo/CARO_0010004>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_15355>))
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4 changes: 2 additions & 2 deletions src/ontology/imports/bfo_import.owl
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Expand Up @@ -10,9 +10,9 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbphenotype/imports/bfo_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-09-21/imports/bfo_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-10-21/imports/bfo_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-09-21</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-10-21</owl:versionInfo>
</owl:Ontology>


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179 changes: 162 additions & 17 deletions src/ontology/imports/chebi_import.owl

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110 changes: 55 additions & 55 deletions src/ontology/imports/cl_import.owl

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3,257 changes: 2,901 additions & 356 deletions src/ontology/imports/go_import.owl

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4 changes: 2 additions & 2 deletions src/ontology/imports/iao_import.owl
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Expand Up @@ -10,9 +10,9 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbphenotype/imports/iao_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-09-21/imports/iao_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-10-21/imports/iao_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/iao/2020-12-09/iao.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-09-21</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-10-21</owl:versionInfo>
</owl:Ontology>


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40 changes: 20 additions & 20 deletions src/ontology/imports/pato_import.owl
Original file line number Diff line number Diff line change
Expand Up @@ -32,9 +32,9 @@
xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#"
xmlns:caloha-reqs-vetted="http://purl.obolibrary.org/obo/caloha-reqs-vetted#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbphenotype/imports/pato_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-09-21/imports/pato_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-10-21/imports/pato_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/pato/releases/2022-08-31/pato.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-09-21</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-10-21</owl:versionInfo>
</owl:Ontology>


Expand Down Expand Up @@ -234472,7 +234472,7 @@ For example, A and B may be gene products and binding of B by A positively regul
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0000161"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A quality of a single process inhering in a bearer by virtue of the bearer&apos;s occurrence per unit time.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:melissa</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PATOC:melissa</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -234657,7 +234657,7 @@ For example, A and B may be gene products and binding of B by A positively regul
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0000297"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A quality of a process which ends earlier than the natural end time or reference process.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:LC</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PATOC:LC</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -235405,7 +235405,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0000502"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A quality of a process which starts later than the natural start time or the reference process.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:LC</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PATOC:LC</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -236008,7 +236008,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process.</owl:annotatedTarget>
<oboInOwl:hasDbXref>PATOC:PortlandMeetingFeb2015</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:mb</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PATOC:mb</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -236658,7 +236658,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001031"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A physical quality inhering in a bearer by virtue of the bearer&apos;s disposition to recover its size and shape after deformation in any way.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">merriam-webster:merriam-webster</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>merriam-webster:merriam-webster</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -236792,7 +236792,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001171"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>An elasticity quality inhering in a bearer by virtue of the bearer&apos;s ability to recover its size and shape after deformation in any way.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">merriam-webster:merriam-webster</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>merriam-webster:merriam-webster</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -237367,7 +237367,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001405"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A nucleate quality inhering in a bearer by virtue of the bearer&apos;s having no nucleus.</owl:annotatedTarget>
<oboInOwl:hasDbXref>Biology-online:Biology-online</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Biology-online:Biology-online</oboInOwl:hasDbXref>
</owl:Axiom>


Expand All @@ -237388,7 +237388,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001406"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A nucleate quality inhering in a bearer by virtue of the bearer&apos;s having two nuclei.</owl:annotatedTarget>
<oboInOwl:hasDbXref>Biology-online:Biology-online</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Biology-online:Biology-online</oboInOwl:hasDbXref>
</owl:Axiom>


Expand All @@ -237409,7 +237409,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001407"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A nucleate quality inhering in a bearer by virtue of the bearer&apos;s having one nucleus.</owl:annotatedTarget>
<oboInOwl:hasDbXref>Biology-online:Biology-online</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Biology-online:Biology-online</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -237450,7 +237450,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001410"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A shape quality inhering in a bearer by virtue of the bearer&apos;s being marked by narrow lines or grooves, usually parallel.</owl:annotatedTarget>
<oboInOwl:hasDbXref>Biology-online:Biology-online</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Biology-online:Biology-online</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -238536,7 +238536,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001597"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>An oriented quality inhering in a bearer by virtue of the bearer&apos;s being turned outward in placement.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">thefreedictionary:thefreedictionary</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>thefreedictionary:thefreedictionary</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -239679,7 +239679,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0001912"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A quality of a single process inhering in a bearer by virtue of the state of bearer&apos;s mechanical, physical, and biochemical processes.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:mb</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PATOC:mb</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -241125,7 +241125,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0002323"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A temporal distribution pattern of process occurrences within a regulation/reference process.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:LC</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PATOC:LC</oboInOwl:hasDbXref>
</owl:Axiom>


Expand All @@ -241148,7 +241148,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0002324"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>The temporal relation between the end of the process with respect to a reference process.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:LC</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PATOC:LC</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0002324"/>
Expand Down Expand Up @@ -241182,7 +241182,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0002325"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>The temporal relation between the start of the process with respect to a reference process.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:LC</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PATOC:LC</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -241250,7 +241250,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0002462"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A composition quality inhering in an bearer by virtue of the bearer&apos;s consisting of collagen.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:WD</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PATOC:WD</oboInOwl:hasDbXref>
</owl:Axiom>


Expand All @@ -241271,7 +241271,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0002468"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A structure quality inhering in a bearer by virtue of the bearer&apos;s being capable of swelling or stretching.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:WD</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PATOC:WD</oboInOwl:hasDbXref>
</owl:Axiom>


Expand All @@ -241294,7 +241294,7 @@ See https://github.com/pato-ontology/pato/issues/331.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PATO_0002478"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A shape quality inhering in a bearer by virtue of the bearer&apos;s being marked by narrow lines or grooves, usually parallel, that are oriented transversely relative to the long axis of the bearer.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PATOC:DS</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PATOC:DS</oboInOwl:hasDbXref>
</owl:Axiom>


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4 changes: 2 additions & 2 deletions src/ontology/imports/ro_import.owl
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Expand Up @@ -16,9 +16,9 @@
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbphenotype/imports/ro_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-09-21/imports/ro_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-10-21/imports/ro_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2022-09-07/ro.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-09-21</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-10-21</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/wbbt_import.owl
Original file line number Diff line number Diff line change
Expand Up @@ -16,9 +16,9 @@
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbphenotype/imports/wbbt_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-09-21/imports/wbbt_import.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-10-21/imports/wbbt_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/wbbt/releases/2022-06-13/wbbt.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-09-21</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-10-21</owl:versionInfo>
</owl:Ontology>


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6 changes: 3 additions & 3 deletions src/ontology/imports/wbls_import.owl
Original file line number Diff line number Diff line change
Expand Up @@ -16,9 +16,9 @@
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/wbphenotype/imports/wbls_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-09-21/imports/wbls_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/wbls/releases/2022-08-18/wbls.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-09-21</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/wbphenotype/releases/2022-10-21/imports/wbls_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/wbls/releases/2022-09-22/wbls.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-10-21</owl:versionInfo>
</owl:Ontology>


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