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159 Open 441 Closed
159 Open 441 Closed
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Issues list

It seems that all the input files for mergeBAM.py are R2.
#653 opened Oct 24, 2024 by yangqihang1230
Allelic analysis HiC-Pro G2 genome not mapping
#652 opened Oct 19, 2024 by luckysardar
4
How can I generate a .hic contact matrix at the fragment level using Micro-C data?
#651 opened Oct 4, 2024 by hanshanmengqi
how to set temporary home directory
#650 opened Sep 17, 2024 by ahmedabbas811
1
mergeSAM.log error
#649 opened Sep 17, 2024 by hcsun1
1
what is the Dumped_Pairs files about
#648 opened Sep 12, 2024 by Hanjiangna
4
HiC-Pro_3.1.0 failed to trim 3' end of the unmapped reads?
#646 opened Sep 8, 2024 by ddzhang3
1
bowtie2-align died with signal 7 (BUS)
#644 opened Sep 4, 2024 by mengying0714
2
Automatically ends HiC-Pro without any prompt
#643 opened Aug 17, 2024 by XuanZhang-Black
1
Error in Hicpro2higlass
#642 opened Aug 7, 2024 by ratheraarif
Error after installation using conda
#641 opened Jul 30, 2024 by aplearnercc
1
HiC-Pro: Error in Quality Checks
#638 opened Jul 19, 2024 by AnushkaChaturvedi
1
How to delete duplicate pairs when using hicpro at high resolution?
#636 opened Jun 17, 2024 by xingql983
1
bowtie install errors
#634 opened May 29, 2024 by elirahbar
"Forward and reverse reads not paired. Check that BAM files have the same read names and are sorted."
#633 opened May 20, 2024 by panapapa14
5
line:303
#629 opened Apr 6, 2024 by Blosers
make: *** [bowtie_pairing] Error 1
#627 opened Mar 22, 2024 by wangguiqian
Low Read Alignment in Initial Bowtie Step
#626 opened Mar 21, 2024 by IzaakH-A1
1
hicpro2juicebox.sh not work for nextflow pipe https://github.com/nservant/nf-core-hic/tree/master
#625 opened Mar 17, 2024 by XuewenWangUGA
contact map in complete format instead of upper
#623 opened Mar 2, 2024 by usernicai
HiC-Pro for ChIA-PET data analysis
#622 opened Feb 26, 2024 by Huang-XN
From allvalidpairs to mcool
#621 opened Feb 18, 2024 by ratheraarif
HiC-Pro not reporting fragment size in allValidPairs file
#620 opened Feb 9, 2024 by sunilnahata
converting allvalidpairs to pairs
#619 opened Jan 29, 2024 by ratheraarif
13
hicpro2juicebox.sh: allValidPairs.pre_juicebox_sorted does not exist or does not contain any reads
#618 opened Jan 24, 2024 by TheRaspberryFox
1
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