Version 1.0.1: pipeline.py bug fix

Full Changelog: v1.0.0...v1.0.1

This bug fix release resolves two bugs in the pipeline.py which were causing the -z preservation option to not be used correctly. See the comparison above for the exact few changes.

Version 1.0.0

This is the first version. It includes three major parts:

1. fasttrack2s3.py
2. pipeline.py
3. bids_corrections.py

Check the README for a complete explanation of each. There is also a first pass of support for the NIH HPC's swarm command.