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June 2021 Release
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| This repository builds the public training materials for the CFDE: https://training.nih-cfde.org | ||
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| The training websites hosts tutorials and resources to learn how to perform bioinformatic analyses and access data. The website also contains CFDE internal resources that includes the website style guide. | ||
| The training website hosts tutorials and resources to learn how to perform bioinformatic analyses and access data. The GitHub repository contains CFDE internal resources, including the [website style guide](./docs/Website-Style-Guide/0index.md) and [website release protocol](./docs/TrainingRepoReleasePlan/TrainingRepo-Release-Plan.md). | ||
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| We welcome suggestions for improvements as well as tutorial topics. Submit all suggestions via CFDE HelpDesk: [email protected] | ||
| Check out our [wiki pages](https://github.com/nih-cfde/training-and-engagement/wiki) for past workshop notes, mini tutorials on setup, and workshop attendee resources (i.e., for managing screen space). | ||
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| Find answers to frequently asked questions on popular topics like AWS, Conda, Snakemake, RNA-Seq, etc. on our [Discussion Board](https://github.com/nih-cfde/training-and-engagement/discussions). If you don't find your particular question listed, we encourage you to post a new discussion and we will ensure to answer it promptly (you'll need a GitHub account to post). | ||
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| We welcome suggestions for improvements as well as tutorial topics. Submit all training suggestions via CFDE HelpDesk: [email protected] | ||
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| ## Workshops | ||
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| <div> | ||
| <p><div style="font-size:22px; font-style: italic">Check out our events calendar for <a href="https://www.nih-cfde.org/events/" target="_blank" rel="noopener" style="color:#336699;">upcoming workshops !</a></div></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:22px; font-style: italic">Past workshops:</a></div></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-June-30,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to Amazon Web Services/Elastic Cloud Computing</a></div><i>June 30, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/RNA-Seq-in-the-cloud:-June-21-&-23,-2021" target="_blank" rel="noopener" style="color:#336699;">RNA-Seq in the Cloud</a></div><i>June 21 & 23, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://us06web.zoom.us/rec/share/wYs0AGJ8cQHZ_UhaE1JJ4q4JmM8K7-F_S95t1OxLPwyuezTTlGjVtGz4ruqwGMp1.0ZBYwGZFeeVAoncw?startTime=1623862864000" target="_blank" rel="noopener" style="color:#336699;">Introduction to RNA-Seq Analysis with Appyters</a></div><i>June 16, 2021 • Pop-up Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://osf.io/kj5av/" target="_blank" rel="noopener" style="color:#336699;">RNA-Seq Concepts, Design, and Workflows</a></div><i>June 9, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/Introduction-to-R:-June-2,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to R</a></div><i>June 2, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px">CFDE Portal Demo</div><i>May 26, 2021 • Pop-up Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/Introduction-to-Workflows:-Snakemake-Part-I-&-II-May-12-&-14th,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to Workflows: Snakemake</a></div><i>May 12 & 14, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-May-05,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to Amazon Web Services/Elastic Cloud Computing</a></div><i>May 5, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/Introduction-to-3D-Tissue-Mapping:-April-28,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to 3D Tissue Mapping</a></div><i>April 28, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-April-22,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to Amazon Web Services/Elastic Cloud Computing</a></div><i>April 22, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-April-21,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to Amazon Web Services/Elastic Cloud Computing</a></div><i>April 21, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="http://bit.ly/3abyDy0" target="_blank" rel="noopener" style="color:#336699;">CFDE Portal Demo</a></div><i>April 14, 2021 • Pop-up Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-Conda:-April-7,-2021" target="_blank" rel="noopener" style="color:#336699;">A Hands-On Intro to Conda</a></div><i>April 7, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-Conda:-March-18,-2021" target="_blank" rel="noopener" style="color:#336699;">A Hands-On Intro to Conda</a></div><i>March 18, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-Conda:-March-4,-2021" target="_blank" rel="noopener" style="color:#336699;">A Hands-On Intro to Conda</a></div><i>March 4, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-February-25,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to Amazon Web Services/Elastic Cloud Computing</a></div><i>Feb 25, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-January-29,-2021" target="_blank" rel="noopener" style="color:#336699;">Introduction to Amazon Web Services/Elastic Cloud Computing</a></div><i>Jan 29, 2021 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px">Introduction to the Kids First Data Resource Portal</div><i>Dec 17, 2020 • Virtual Workshop</i><br/>Workshop Resources: <a href="./Common-Fund-Tools/Kids-First/Portal-Setup-And-Permissions/KF_3_KF_Registration/" target="_blank" rel="noopener" style="color:#336699;">Setup</a> • <a href="./Common-Fund-Tools/Kids-First/Exploring-Data-in-the-KF-Portal/KF_5_Explore/" target="_blank" rel="noopener" style="color:#336699;">Explore</a> • <a href="./Common-Fund-Tools/Kids-First/Advanced-KF-Portal-Queries/KF_9_AdvancedQuery/" target="_blank" rel="noopener" style="color:#336699;">Queries</a></p> | ||
| </div> | ||
| <div> | ||
| <p><div style="font-size:19px"><a href="https://github.com/nih-cfde/training-and-engagement/wiki/A-Hands-On-Introduction-to-AWS:-December-1,-2020" target="_blank" rel="noopener" style="color:#336699;">Introduction to Amazon Web Services/Elastic Cloud Computing</a></div><i>Dec 1, 2020 • Virtual Workshop</i><br/></p> | ||
| </div> | ||
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| ## Contributing | ||
| Hello, if you'd like to contribute to the CFDE Training website, read on! | ||
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| By contributing to this repository, you agree to release all your contributions under the same terms as the license itself: [the Creative Commons Zero (aka Public Domain) license](./license.md). If you are OK with this condition, then we welcome both you and your contribution! | ||
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| If you have any questions about contributing, please open an issue or email the help desk ([email protected]) and we will lend a hand at the earliest. | ||
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