full_test.config updates

nf-core · Jan 22, 2025 · a26835d · a26835d
1 parent f2c6b03
commit a26835d
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/conf/test_full.config b/conf/test_full.config
@@ -20,15 +20,15 @@ params {
     max_time            = '8.h'
 
     // Input data
-    input               = 'assets/samplesheet_full_small.csv'
+    input               = "${projectDir}/assets/samplesheet_full_small.csv"
     outdir              = 'results'
 
     // Genome references
     genome              = 'GRCh37'
     analysis            = 'germline'
     variant_type        = "small"
     method              = 'happy,rtgtools'
-    preprocess          = "normalization,deduplication,filter_contigs"
+    preprocess          = "normalize,deduplicate,filter_contigs"
 
     truth_id            = "HG002"
     truth_vcf           = "https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/AshkenazimTrio/HG002_NA24385_son/NISTv4.2.1/GRCh37/SupplementaryFiles/HG002_GRCh37_1_22_v4.2.1_highconf.vcf.gz"