Code

dev -> main for 3.1.2#3406

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Merged

mirpedrol merged 68 commits intomainnf-core/tools:mainfrom devnf-core/tools:devCopy head branch name to clipboardJan 20, 2025

+327-57

Commits

Commits on Dec 20, 2024

• bump to 3.2.0dev

  mirpedrol

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• [automated] Update CHANGELOG.md

  nf-core-bot

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• fix trailing spaces in conf/test.config

  mirpedrol

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• run pre-comit when rendering template for pipelines sync

  mirpedrol

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• add newline

  mirpedrol

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  6b43881

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• bump to 3.1.2dev

  mirpedrol

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• Allow downloading a specific commit ID

  muffato

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• Added tests

  

  fellen31

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  muffato

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• Added more tests

  muffato

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• Updated the changelog

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• Added some documentation

  muffato

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Commits on Jan 1, 2025

• Update pre-commit hook pre-commit/mirrors-mypy to v1.14.1

  renovate[bot]

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Commits on Jan 4, 2025

• Update pre-commit hook astral-sh/ruff-pre-commit to v0.8.6

  renovate[bot]

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Commits on Jan 7, 2025

• Merge pull request #3370 from mirpedrol/bump-3.2.0dev

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  mirpedrol

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• Merge branch 'dev' into download_commits

  mirpedrol

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• only append module name if it is a dir and contains main.nf

  mirpedrol

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• update changelog

  mirpedrol

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• Merge branch 'dev' into renovate/pre-commit-mirrors-mypy-1.x

  mashehu

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  e0d8732

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• add tests for get_installed_modules() utils function

  mirpedrol

  committed
  069fce2

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• remove type hint to make mypy pass

  mashehu

  committed
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• Merge branch 'dev' into renovate/astral-sh-ruff-pre-commit-0.x

  mashehu

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• Merge pull request #3384 from mirpedrol/modules-bump-versions

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  mirpedrol

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• Merge pull request #3376 from nf-core/renovate/astral-sh-ruff-pre-commit-0.x

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• Merge pull request #3379 from nf-core/renovate/pre-commit-mirrors-mypy-1.x

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• Update python:3.12-slim Docker digest to 10f3aaa (#3381)

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  renovate[bot]

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Commits on Jan 8, 2025

• remove required from oneOf, allOf and anyOf instances in a schema

  mirpedrol

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• print complete error message from schema validation on debug

  mirpedrol

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• [automated] Update CHANGELOG.md

  nf-core-bot

  committed
  958f58e

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• reduce code

  mirpedrol

  committed
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• handle anyOf, allOf, oneOf in top level

  mirpedrol

  committed
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• add tests for validate_default_params function

  mirpedrol

  committed
  b1c7a8c

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• Update ci.yml

  sateeshperi

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• Merge branch 'dev' into sateeshperi-patch-1

  sateeshperi

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• Merge pull request #3388 from nf-core/sateeshperi-patch-1

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  maxulysse

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Commits on Jan 9, 2025

• Merge pull request #3386 from mirpedrol/schema-allow-oneof-anyof-allof

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  mirpedrol

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Commits on Jan 13, 2025

• Merge branch 'dev' into run-prettier-on-sync

  mirpedrol

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• do not run pre-commit if we are not on a git repo

  mirpedrol

  committed
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• Merge pull request #3371 from mirpedrol/run-prettier-on-sync

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  mirpedrol

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• Factored out the commit ID

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  muffato

  and

  mirpedrol

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• Not needed

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  muffato

  and

  mirpedrol

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• Factored out the commit ID

  muffato

  committed
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• Factored out the commit ID

  muffato

  committed
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• Merge remote-tracking branch 'origin/dev' into download_commits

  muffato

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• Merge pull request #3374 from nf-core/download_commits

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  muffato

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• Reorganise download test to ensure setup and download are executed on the same runner.

  MatthiasZepper

  committed
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• Add explicit container cache inspection to action.

  MatthiasZepper

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• Changelog.

  MatthiasZepper

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• Merge pull request #3389 from MatthiasZepper/no_env_in_download_action

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Commits on Jan 14, 2025

• fix sync GHA by removing quotes from parsed branch name

  mirpedrol

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• [automated] Update CHANGELOG.md

  nf-core-bot

  committed
  ed1cbde

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• make rocrate no git info message a debug message to avoid seeing it every time we run nf-core pipelines lint

  mirpedrol

  committed
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• manifest.authors is not mandatory anymore

  mirpedrol

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• [automated] Update CHANGELOG.md

  nf-core-bot

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Commits on Jan 15, 2025

• Merge pull request #3397 from mirpedrol/make-author-not-required

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  mirpedrol

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• Merge branch 'dev' into fix-sync-gha

  mirpedrol

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• Merge pull request #3394 from mirpedrol/fix-sync-gha

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  mirpedrol

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• update nf-schema version

  nvnieuwk

  committed
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• update changelog

  nvnieuwk

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Commits on Jan 16, 2025

• Merge pull request #3401 from nvnieuwk/update-nf-schema

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Commits on Jan 20, 2025

• bump version to 3.1.2

  mirpedrol

  committed
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• remove jinja formatting which was deleting line breaks

  mirpedrol

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• Merge pull request #3405 from mirpedrol/fix-jinja

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  mirpedrol

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• Merge branch 'dev' into bump-3.1.2

  mirpedrol

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• Merge pull request #3404 from mirpedrol/bump-3.1.2

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  mirpedrol

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• changelog updates

  mirpedrol

  committed
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• Merge pull request #3407 from mirpedrol/changelog

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  mirpedrol

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• update release date [skip ci]

  mirpedrol

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• Merge pull request #3408 from mirpedrol/update-date

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