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Add support for generating mag samplesheet #1912

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Add support for generating mag samplesheet

Add support for generating mag samplesheet #1912

Run time

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Job Run time
Run pipeline with test data (23.04.0, test)
19m 17s
Run pipeline with test data (23.04.0, test_nopreprocessing)
18m 34s
Run pipeline with test data (23.04.0, test_noprofiling)
9m 33s
Run pipeline with test data (23.04.0, test_krakenuniq)
9m 20s
Run pipeline with test data (23.04.0, test_malt)
6m 29s
Run pipeline with test data (23.04.0, test_motus)
34m 32s
Run pipeline with test data (23.04.0, test_falco)
5m 34s
Run pipeline with test data (23.04.0, test_fastp)
12m 6s
Run pipeline with test data (23.04.0, test_alternativepreprocessing)
14m 55s
Run pipeline with test data (23.04.0, test_bbduk)
12m 15s
Run pipeline with test data (23.04.0, test_prinseqplusplus)
12m 36s
Run pipeline with test data (latest-everything, test)
19m 54s
Run pipeline with test data (latest-everything, test_nopreprocessing)
19m 50s
Run pipeline with test data (latest-everything, test_noprofiling)
8m 22s
Run pipeline with test data (latest-everything, test_krakenuniq)
9m 58s
Run pipeline with test data (latest-everything, test_malt)
6m 14s
Run pipeline with test data (latest-everything, test_motus)
32m 45s
Run pipeline with test data (latest-everything, test_falco)
6m 56s
Run pipeline with test data (latest-everything, test_fastp)
13m 15s
Run pipeline with test data (latest-everything, test_alternativepreprocessing)
14m 3s
Run pipeline with test data (latest-everything, test_bbduk)
12m 1s
Run pipeline with test data (latest-everything, test_prinseqplusplus)
11m 20s
5h 9m 49s