test: add required params

nf-core · Jan 7, 2025 · f40e9f5 · f40e9f5
1 parent 1516bca
commit f40e9f5
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Showing 2 changed files with 55 additions and 5 deletions.
diff --git a/subworkflows/local/fusionreport_workflow/tests/main.nf.test b/subworkflows/local/fusionreport_workflow/tests/main.nf.test
@@ -26,23 +26,23 @@ nextflow_workflow {
                 // Input channels
                 input[0] = Channel.of(
                     [ [ id:'test_sample' ],
-                      file("https://github.com/nf-core/test-datasets/raw/rnafusion/testdata/human/reads_1.fq.gz") ]
+                    file("https://github.com/nf-core/test-datasets/raw/rnafusion/testdata/human/reads_1.fq.gz") ]
                 )
 
                 input[1] = FUSIONREPORT_DOWNLOAD.out.fusionreport_ref
 
                 input[2] = Channel.of(
-                      [[ id:'test_sample' ],
+                    [[ id:'test_sample' ],
                         file("https://github.com/Clinical-Genomics/fusion-report/raw/master/tests/test_data/arriba.tsv") ]
                 )
 
                 input[3] =  Channel.of(
-                      [[ id:'test_sample' ],
+                    [[ id:'test_sample' ],
                         file("https://github.com/Clinical-Genomics/fusion-report/raw/master/tests/test_data/starfusion.tsv") ]
                 )
 
                 input[4] =  Channel.of(
-                      [[ id:'test_sample' ],
+                    [[ id:'test_sample' ],
                         file("https://github.com/Clinical-Genomics/fusion-report/raw/master/tests/test_data/fusioncatcher.txt") ]
                 )
 
@@ -51,6 +51,10 @@ nextflow_workflow {
             params {
                 fusioninspector_only = false
                 tools_cutoff = 1
+                arriba          = true
+                starfusion      = true
+                fusioncatcher   = true
+                no_cosmic       = true
                 outdir               = "$outputDir"
             }
         }
@@ -69,5 +73,5 @@ nextflow_workflow {
         }
     }
 
-    
+
 }
diff --git a/subworkflows/local/fusionreport_workflow/tests/main.nf.test.snap b/subworkflows/local/fusionreport_workflow/tests/main.nf.test.snap
@@ -0,0 +1,46 @@
+{
+    "FUSIONREPORT_WORKFLOW - Full Test": {
+        "content": [
+            [
+                [
+                    {
+                        "id": "test_sample"
+                    },
+                    "test_sample.fusionreport.tsv:md5,3593b7021f26cc5427fdc96f0d1c72f0"
+                ]
+            ],
+            [
+                [
+                    {
+                        "id": "test_sample"
+                    },
+                    "test_sample.fusionreport_filtered.tsv:md5,3593b7021f26cc5427fdc96f0d1c72f0"
+                ]
+            ],
+            [
+                [
+                    {
+                        "id": "test_sample"
+                    },
+                    "test_sample_fusionreport_index.html:md5,3513bcaa58446399c0957db69402d3bd"
+                ]
+            ],
+            [
+                [
+                    {
+                        "id": "test_sample"
+                    },
+                    "test_sample.fusions.csv:md5,49f378c2112d7e0b3b17d9095c79e6bd"
+                ]
+            ],
+            [
+                "versions.yml:md5,90749dbf8e3e7b259c935eabb8c6ce1e"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.3"
+        },
+        "timestamp": "2025-01-07T13:31:41.215356596"
+    }
+}