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Important! Template update for nf-core/tools v3.0.2 #10

Merged
merged 3 commits into from
Oct 18, 2024
Merged

Important! Template update for nf-core/tools v3.0.2 #10

merged 3 commits into from
Oct 18, 2024

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Version 3.0.2 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-3.0.2 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/docs/contributing/sync/.

For more information about this release of nf-core/tools, please see the v3.0.2 release page.

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github-actions bot commented Oct 18, 2024 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 7e34131

+| ✅ 202 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗   7 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: conf/igenomes_ignored.config
  • nextflow_config - Config manifest.version should end in dev: 1.0.0
  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in nextflow.config: Optionally, you can add a pipeline-specific nf-core config at https://github.com/nf-core/configs
  • pipeline_todos - TODO string in README.md: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file.
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 3.0.2
  • Run at 2024-10-18 09:47:02

@Felix-Kummer Felix-Kummer self-requested a review October 18, 2024 10:00
Felix-Kummer
Felix-Kummer approved these changes Oct 18, 2024
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Changes before first release.
In-depth review will be conducted for the first release.

@Felix-Kummer Felix-Kummer merged commit 6fe422b into dev Oct 18, 2024
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@Felix-Kummer Felix-Kummer Felix-Kummer approved these changes

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@nf-core-bot @Felix-Kummer