Fix nf-core linting issues

nf-core · Oct 9, 2024 · ca86bd8 · ca86bd8
1 parent 9d9a977
commit ca86bd8
Show file tree

Hide file tree

Showing 5 changed files with 5 additions and 5 deletions.
diff --git a/.nf-core.yml b/.nf-core.yml
@@ -14,6 +14,8 @@ template:
   name: proteinfold
   org: nf-core
   outdir: .
-  skip_features: null
-  version: 1.1.1
+  skip_features:
+    - fastqc
+    - igenomes
+  version: 1.2.0dev
 update: null
diff --git a/nextflow.config b/nextflow.config
@@ -312,6 +312,7 @@ manifest {
     homePage        = 'https://github.com/nf-core/proteinfold'
     description     = """Protein 3D structure prediction pipeline"""
     mainScript      = 'main.nf'
+    nextflowVersion = '!>=24.04.2'
     version         = '1.2.0dev'
     doi             = '10.5281/zenodo.7629996'
 }

diff --git a/workflows/alphafold2.nf b/workflows/alphafold2.nf
@@ -26,7 +26,6 @@ include { MULTIQC } from '../modules/nf-core/multiqc/main'
 // SUBWORKFLOW: Consisting entirely of nf-core/modules
 //
 include { paramsSummaryMap       } from 'plugin/nf-validation'
-include { fromSamplesheet        } from 'plugin/nf-validation'
 include { paramsSummaryMultiqc   } from '../subworkflows/nf-core/utils_nfcore_pipeline'
 include { softwareVersionsToYAML } from '../subworkflows/nf-core/utils_nfcore_pipeline'
 include { methodsDescriptionText } from '../subworkflows/local/utils_nfcore_proteinfold_pipeline'

diff --git a/workflows/colabfold.nf b/workflows/colabfold.nf
@@ -26,7 +26,6 @@ include { MULTIQC } from '../modules/nf-core/multiqc/main'
 // SUBWORKFLOW: Consisting entirely of nf-core/modules
 //
 include { paramsSummaryMap       } from 'plugin/nf-validation'
-include { fromSamplesheet        } from 'plugin/nf-validation'
 include { paramsSummaryMultiqc   } from '../subworkflows/nf-core/utils_nfcore_pipeline'
 include { softwareVersionsToYAML } from '../subworkflows/nf-core/utils_nfcore_pipeline'
 include { methodsDescriptionText } from '../subworkflows/local/utils_nfcore_proteinfold_pipeline'

diff --git a/workflows/esmfold.nf b/workflows/esmfold.nf
@@ -25,7 +25,6 @@ include { MULTIQC } from '../modules/nf-core/multiqc/main'
 // SUBWORKFLOW: Consisting entirely of nf-core/modules
 //
 include { paramsSummaryMap       } from 'plugin/nf-validation'
-include { fromSamplesheet        } from 'plugin/nf-validation'
 include { paramsSummaryMultiqc   } from '../subworkflows/nf-core/utils_nfcore_pipeline'
 include { softwareVersionsToYAML } from '../subworkflows/nf-core/utils_nfcore_pipeline'
 include { methodsDescriptionText } from '../subworkflows/local/utils_nfcore_proteinfold_pipeline'