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Csv files point to nf-core repository #15

Merged
merged 4 commits into from
Mar 20, 2024
Merged

Csv files point to nf-core repository #15

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19a98f9
change csv files to point to the nf-core repository
eugeniafontecha Mar 19, 2024
1bc6ad2
fix github urls in csv files
eugeniafontecha Mar 19, 2024
7a1cabe
prettify CHAGELOG file
eugeniafontecha Mar 19, 2024
6138fa6
Merge branch 'dev' into dev
LouisLeNezet Mar 20, 2024
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4 changes: 4 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -9,6 +9,10 @@ Initial release of nf-core/phaseimpute, created with the [nf-core](https://nf-co

### `Added`

### `Changed`

[#15](https://github.com/nf-core/phaseimpute/pull/15) - Changed test csv files to point to nf-core repository

### `Fixed`

### `Dependencies`
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1 change: 1 addition & 0 deletions README.md
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Expand Up @@ -92,6 +92,7 @@ We thank the following people for their extensive assistance in the development

- Anabella Trigilla
- Saul Pierotti
- Eugenia Fontecha

## Contributions and Support

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2 changes: 1 addition & 1 deletion tests/csv/panel.csv
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panel,vcf,index,sites,tsv,legend,phased
1000GP.s.norel,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/panel/21_22/1000GP.chr21_22.s.norel.bcf,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/panel/21_22/1000GP.chr21_22.s.norel.bcf.csi,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/panel/21_22/1000GP.chr21_22.s.norel.sites.bcf,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/panel/21_22/1000GP.chr21_22.s.norel.tsv.gz,,TRUE
1000GP.s.norel,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/panel/21_22/1000GP.chr21_22.s.norel.bcf,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/panel/21_22/1000GP.chr21_22.s.norel.bcf.csi,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/panel/21_22/1000GP.chr21_22.s.norel.sites.bcf,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/panel/21_22/1000GP.chr21_22.s.norel.tsv.gz,,TRUE
6 changes: 3 additions & 3 deletions tests/csv/sample_bam.csv
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sample,bam,bai
NA12878,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/individuals/NA12878/NA12878.s.1x.bam,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/individuals/NA12878/NA12878.s.1x.bam.bai
NA19401,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/individuals/NA19401/NA19401.s.1x.bam,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/individuals/NA19401/NA19401.s.1x.bam.bai
NA20359,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/individuals/NA20359/NA20359.s.1x.bam,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/individuals/NA20359/NA20359.s.1x.bam.bai
NA12878,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA12878/NA12878.s.1x.bam,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA12878/NA12878.s.1x.bam.bai
NA19401,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA19401/NA19401.s.1x.bam,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA19401/NA19401.s.1x.bam.bai
NA20359,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA20359/NA20359.s.1x.bam,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA20359/NA20359.s.1x.bam.bai
6 changes: 3 additions & 3 deletions tests/csv/sample_vcf.csv
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@@ -1,4 +1,4 @@
sample,vcf,csi
NA12878,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/individuals/NA12878/NA12878.s.1x.bcf,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/individuals/NA12878/NA12878.s.1x.bcf.csi
NA19401,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/individuals/NA19401/NA19401.s.1x.bcf,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/individuals/NA19401/NA19401.s.1x.bcf.csi
NA20359,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/individuals/NA20359/NA20359.s.1x.bcf,https://raw.githubusercontent.com/louislenezet/test-datasets/imputation/data/individuals/NA20359/NA20359.s.1x.bcf.csi
NA12878,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA12878/NA12878.s.1x.bcf,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA12878/NA12878.s.1x.bcf.csi
NA19401,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA19401/NA19401.s.1x.bcf,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA19401/NA19401.s.1x.bcf.csi
NA20359,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA20359/NA20359.s.1x.bcf,https://raw.githubusercontent.com/nf-core/test-datasets/phaseimpute/data/individuals/NA20359/NA20359.s.1x.bcf.csi
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