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Merge pull request #165 from LouisLeNezet/metromap
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Update metromap and logo
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LouisLeNezet authored Dec 9, 2024
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3 changes: 2 additions & 1 deletion CHANGELOG.md
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v1.0.0 - Black Labrador [2024-11-30]
## v1.0.0 - Black Labrador [2024-12-09]

Initial release of nf-core/phaseimpute, created with the [nf-core](https://nf-co.re/) template.
Special thanks to [Matthias Hörtenhuber](https://github.com/mashehu), [Mazzalab](https://github.com/mazzalab) and [Sofia Stamouli](https://github.com/sofstam) for the review of this release.
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- [#158](https://github.com/nf-core/phaseimpute/pull/158) - Remove frequency computation and phasing from full test to reduce cost and computational time.
- [#164](https://github.com/nf-core/phaseimpute/pull/164) - Rename `BAM_REGION_SAMTOOLS` to `BAM_EXTRACT_REGION_SAMTOOLS`. Remove `GLIMPSE2_SPLITREFERENCE` as it is not used. Add more steps to `test_all` profile for more exhaustivity.
- [#163](https://github.com/nf-core/phaseimpute/pull/163) - Improve configuration for demanding processes. Use Genome in a Bottle VCF benchmarking file for AWS full test. Moved from `glimpse1` to `glimpse2` for the full test profile.
- [#165](https://github.com/nf-core/phaseimpute/pull/165) - Update metro map and add logo to the documentation.

### `Fixed`

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4 changes: 2 additions & 2 deletions README.md
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<h1>
<picture>
<source media="(prefers-color-scheme: dark)" srcset="docs/images/nf-core-phaseimpute_logo_dark.png">
<img alt="nf-core/phaseimpute" src="docs/images/nf-core-phaseimpute_logo_light.png">
<source media="(prefers-color-scheme: dark)" srcset="docs/images/logo/nf-core-phaseimpute_logo_dark.png">
<img alt="nf-core/phaseimpute" src="docs/images/logo/nf-core-phaseimpute_logo_light.png">
</picture>
</h1>

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173 changes: 0 additions & 173 deletions docs/NfCore_library.xml

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605 changes: 605 additions & 0 deletions docs/images/logo/nf-core-phaseimpute.svg
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7,284 changes: 7,283 additions & 1 deletion docs/images/metro/MetroMap.xml

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