Merge pull request #16 from mrvictorica/remove-outdir-from-test

Removed outdir parameters from tests config files

CHANGELOG.md

@@ -9,6 +9,10 @@ Initial release of nf-core/phaseimpute, created with the [nf-core](https://nf-co
 
 ### `Added`
 
+### `Changed`
+
+- [#16](https://github.com/nf-core/phaseimpute/pull/16) - Removed outdir from test config files
+
 ### `Fixed`
 
 ### `Dependencies`

README.md

@@ -90,8 +90,9 @@ nf-core/phaseimpute was originally written by Louis Le Nézet.
 
 We thank the following people for their extensive assistance in the development of this pipeline:
 
-- Anabella Trigilla
+- Anabella Trigila
 - Saul Pierotti
+- Matias Romero Victorica
 
 ## Contributions and Support
 

conf/test.config

@@ -20,8 +20,6 @@ params {
     max_time   = '6.h'
 
     // Input data
-    // TODO nf-core: Specify the paths to your test data on nf-core/test-datasets
-    // TODO nf-core: Give any required params for the test so that command line flags are not needed
     input  = "${projectDir}/tests/csv/bam.csv"
 
     // Genome references

conf/test_full.config

@@ -32,6 +32,5 @@ params {
     input                  = "tests/csv/sample_sim.csv"
     panel                  = "tests/csv/panel.csv"
     input_region_string    = "all"
-    outdir                 = "results/test_full"
     step                   = "simulate"
 }

conf/test_sim.config

@@ -23,7 +23,6 @@ params {
     input                = "tests/csv/sample_sim.csv"
     input_region_file    = "tests/csv/regionsheet.csv"
     depth                = [1, 2]
-    outdir               = "results/test_sim"
     genome               = "GRCh38"
 
     map                  = "/groups/dog/llenezet/test-datasets/data/genetic_maps.b38/chr21.b38.gmap.gz"