Improve samplesheet generation #757
Triggered via pull request
October 17, 2024 23:20
atrigila
Status
Cancelled
Total duration
41m 22s
Artifacts
–
Annotations
64 errors and 11 warnings
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latest-everything | docker | 6/6
Process completed with exit code 1.
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nf - Kraken.kraken2:
nf - Kraken#L1
Assertion failed:
1 of 2 assertions failed
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nf - FQTK.FQTK:
nf - FQTK#L1
Assertion failed:
54 of 54 assertions failed
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nf - Skip Tools.Skip Fastqc:
nf - Skip Tools#L1
Assertion failed:
3 of 5 assertions failed
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nf - Skip Tools.Skip Fastp:
nf - Skip Tools#L1
Assertion failed:
1 of 2 assertions failed
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latest-everything | docker | 2/6
Process completed with exit code 1.
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nf - BCL2FASTQ.Bcl2Fastq:
nf - BCL2FASTQ#L1
Assertion failed:
1 of 2 assertions failed
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nf - BASES2FASTQ.Bases2Fastq:
nf - BASES2FASTQ#L1
Assertion failed:
8 of 8 assertions failed
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nf - mkfastq.MKFASTQ:
nf - mkfastq#L1
Assertion failed:
3 of 8 assertions failed
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nf - Skip Tools.Skip MultiQC:
nf - Skip Tools#L1
Assertion failed:
3 of 5 assertions failed
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nf - Skip Tools.Skip Fastp & Fastqc:
nf - Skip Tools#L1
Assertion failed:
1 of 2 assertions failed
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24.04.2 | docker | 5/6
Process completed with exit code 1.
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nf - FQTK.FQTK:
nf - FQTK#L1
Assertion failed:
1 of 2 assertions failed
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nf - BCLCONVERT-mini.BCL-CONVERT-mini:
nf - BCLCONVERT-mini#L1
Assertion failed:
3 of 5 assertions failed
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nf - Skip Tools.Skip Fastp:
nf - Skip Tools#L1
Assertion failed:
3 of 5 assertions failed
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nf - Skip Tools.Skip Trimming:
nf - Skip Tools#L1
Assertion failed:
1 of 2 assertions failed
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24.04.2 | docker | 6/6
Process completed with exit code 1.
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nf - Kraken.kraken2:
nf - Kraken#L1
Assertion failed:
1 of 2 assertions failed
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nf - FQTK.FQTK:
nf - FQTK#L1
Assertion failed:
3 of 54 assertions failed
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nf - Skip Tools.Skip Fastqc:
nf - Skip Tools#L1
Assertion failed:
3 of 5 assertions failed
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nf - Skip Tools.Skip Fastp:
nf - Skip Tools#L1
Assertion failed:
1 of 2 assertions failed
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24.04.2 | docker | 2/6
Process completed with exit code 1.
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nf - BCL2FASTQ.Bcl2Fastq:
nf - BCL2FASTQ#L1
Assertion failed:
1 of 2 assertions failed
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nf - BASES2FASTQ.Bases2Fastq:
nf - BASES2FASTQ#L1
Assertion failed:
2 of 8 assertions failed
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nf - mkfastq.MKFASTQ:
nf - mkfastq#L1
Assertion failed:
3 of 8 assertions failed
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nf - Skip Tools.Skip MultiQC:
nf - Skip Tools#L1
Assertion failed:
3 of 5 assertions failed
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nf - Skip Tools.Skip Fastp & Fastqc:
nf - Skip Tools#L1
Assertion failed:
1 of 2 assertions failed
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latest-everything | docker | 5/6
Process completed with exit code 1.
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nf - FQTK.FQTK:
nf - FQTK#L1
Assertion failed:
2 of 2 assertions failed
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nf - BCLCONVERT-mini.BCL-CONVERT-mini:
nf - BCLCONVERT-mini#L1
Assertion failed:
3 of 5 assertions failed
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nf - Skip Tools.Skip Fastp:
nf - Skip Tools#L1
Assertion failed:
3 of 5 assertions failed
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nf - Skip Tools.Skip Trimming:
nf - Skip Tools#L1
Assertion failed:
1 of 2 assertions failed
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latest-everything | docker | 1/6
Process completed with exit code 1.
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nf - BASES2FASTQ.Bases2Fastq:
nf - BASES2FASTQ#L1
Assertion failed:
2 of 2 assertions failed
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nf - mkfastq.MKFASTQ:
nf - mkfastq#L1
Assertion failed:
1 of 2 assertions failed
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nf - Kraken.kraken2:
nf - Kraken#L1
Assertion failed:
3 of 5 assertions failed
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nf - Skip Tools.Skip Fastp & Fastqc:
nf - Skip Tools#L1
Assertion failed:
3 of 5 assertions failed
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nf - Skip Tools.Skip Fastqc:
nf - Skip Tools#L1
Assertion failed:
1 of 2 assertions failed
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nf - BASES2FASTQ.Bases2Fastq:
nf - BASES2FASTQ#L1
Assertion failed:
1 of 2 assertions failed
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nf - mkfastq.MKFASTQ:
nf - mkfastq#L1
Assertion failed:
1 of 2 assertions failed
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nf - Kraken.kraken2:
nf - Kraken#L1
Assertion failed:
3 of 5 assertions failed
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nf - Skip Tools.Skip Fastp & Fastqc:
nf - Skip Tools#L1
Assertion failed:
3 of 5 assertions failed
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nf - Skip Tools.Skip Fastqc:
nf - Skip Tools#L1
Assertion failed:
1 of 2 assertions failed
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24.04.2 | docker | 1/6
Process completed with exit code 1.
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24.04.2 | docker | 3/6
Process completed with exit code 1.
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nf - BCLCONVERT.BCL-CONVERT:
nf - BCLCONVERT#L1
Assertion failed:
1 of 2 assertions failed
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nf - BCL2FASTQ.Bcl2Fastq:
nf - BCL2FASTQ#L1
Assertion failed:
3 of 5 assertions failed
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nf - Sgdemux.SGDEMUX:
nf - Sgdemux#L1
Assertion failed:
3 of 54 assertions failed
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nf - Test PE.Bcl2Fastq_pe:
nf - Test PE#L1
Assertion failed:
3 of 5 assertions failed
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nf - Skip Tools.Skip MultiQC:
nf - Skip Tools#L1
Assertion failed:
1 of 2 assertions failed
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latest-everything | docker | 3/6
Process completed with exit code 1.
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nf - BCLCONVERT.BCL-CONVERT:
nf - BCLCONVERT#L1
Assertion failed:
1 of 2 assertions failed
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nf - BCL2FASTQ.Bcl2Fastq:
nf - BCL2FASTQ#L1
Assertion failed:
3 of 5 assertions failed
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nf - Sgdemux.SGDEMUX:
nf - Sgdemux#L1
Assertion failed:
54 of 54 assertions failed
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nf - Test PE.Bcl2Fastq_pe:
nf - Test PE#L1
Assertion failed:
3 of 5 assertions failed
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nf - Skip Tools.Skip MultiQC:
nf - Skip Tools#L1
Assertion failed:
1 of 2 assertions failed
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latest-everything | docker | 4/6
Process completed with exit code 1.
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nf - BCLCONVERT-mini.BCL-CONVERT-mini:
nf - BCLCONVERT-mini#L1
Assertion failed:
1 of 2 assertions failed
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nf - BCLCONVERT.BCL-CONVERT:
nf - BCLCONVERT#L1
Assertion failed:
3 of 5 assertions failed
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nf - Skip Tools.Skip Trimming:
nf - Skip Tools#L1
Assertion failed:
2 of 5 assertions failed
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nf - Sgdemux.SGDEMUX:
nf - Sgdemux#L1
Assertion failed:
2 of 2 assertions failed
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nf - Test PE.Bcl2Fastq_pe:
nf - Test PE#L1
Assertion failed:
1 of 2 assertions failed
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24.04.2 | docker | 4/6
Canceling since a higher priority waiting request for 'nf-core CI-277' exists
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24.04.2 | docker | 4/6
The operation was canceled.
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latest-everything | docker | 6/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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latest-everything | docker | 2/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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24.04.2 | docker | 5/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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24.04.2 | docker | 6/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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24.04.2 | docker | 2/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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latest-everything | docker | 5/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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latest-everything | docker | 1/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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24.04.2 | docker | 1/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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24.04.2 | docker | 3/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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latest-everything | docker | 3/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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latest-everything | docker | 4/6
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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