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Localizer based labeling#46

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NathanMolinier merged 23 commits intomainneuropoly/totalspineseg:mainfrom localizer-based-labelingneuropoly/totalspineseg:localizer-based-labelingCopy head branch name to clipboardSep 27, 2024

+388-100

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Commits on Sep 7, 2024

• Add localizer support for disc and vertebrae detection

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• Clarify argument descriptions in iterative_label.py

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• Enhance locs-dir argument clarity in iterative_label.py

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• Enhance inference script with localizer support and config options

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• Fix localizer path not send to uterative label

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• Refactor: Rename variable for clarity in inference script

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• Refine masking logic in iterative_label function

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• Fix load condition for localizer images

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• Add localizer-based labeling details to README

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• Improve README structure and clarify localizer usage

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• Refactor: Condense PDF preview link in README

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• Simplify Section Titles in README

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• Update README section titles for clarity

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• Add crucial usage disclaimer to README

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Commits on Sep 8, 2024

• Support single file input and standardize arguments

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Commits on Sep 9, 2024

• Clarify usage notes in README

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• Expand localizer search and generate preview images

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• Fix spelling of "vertebrae" across multiple files

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• Fix example usage in CLI help text in extract_levels

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Commits on Sep 21, 2024

• Update totalspineseg/inference.py

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• Update totalspineseg/inference.py

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• Update totalspineseg/utils/iterative_label.py

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• Merge branch 'main' into localizer-based-labeling

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