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NESTML Benchmark with MPI #1069

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NESTML Benchmark with MPI #1069

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@pnbabu pnbabu commented Jun 25, 2024 •
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Benchmark scripts for NESTML

@pnbabu pnbabu marked this pull request as draft June 26, 2024 09:01
pnbabu and others added 28 commits July 8, 2024 14:13
@pnbabu
Modify script to add memory benchmark
f8a7c30
add ISI plotting to benchmark script
968ed08
@pnbabu
Merge remote-tracking branch 'upstream/master' into nestml_benchmark
610382b
@pnbabu
Merge remote-tracking branch 'origin/nestml_benchmark' into nestml_be…
610a9fc 
…nchmark
add aeif_psc_alpha neuron model
21f9e07
@pnbabu
Update benchmark scripts
4240afb
@pnbabu
Merge remote-tracking branch 'origin/nestml_benchmark' into nestml_be…
ffd20bc 
…nchmark
@pnbabu
Update sbatch script
d886bac
add N_rec_exc and N_rec_inh parameters
3149489
add debug print information
6b34d2a
@pnbabu
Add print statements
cd84db9
@pnbabu
Merge remote-tracking branch 'origin/nestml_benchmark' into nestml_be…
9cf62ee 
…nchmark
add ISI plots script
fb36493
@pnbabu
Add short_sim command line arg
ce14597
@pnbabu
Merge remote-tracking branch 'origin/nestml_benchmark' into nestml_be…
f065e4e 
…nchmark
adding better RNG seeding
2120c74
add ISI plots script
b6ea30f
add ISI plots script
6b94665
fix isi plotting script
b0e8546
@pnbabu
Update iterations for short simulations
4302bf2
@pnbabu
Merge remote-tracking branch 'origin/nestml_benchmark' into nestml_be…
8a5aae5 
…nchmark
update aeif_psc_alpha neuron to eliminate kernels and convolutions
156d060
merge benchmarking across threads and across compute nodes in benchma…
104416c 
…rking script
merge benchmarking across threads and across compute nodes in benchma…
4d7f57f 
…rking script
merge benchmarking across threads and across compute nodes in benchma…
c0ce5c2 
…rking script
merge benchmarking across threads and across compute nodes in benchma…
babd614 
…rking script
merge benchmarking across threads and across compute nodes in benchma…
8ede374 
…rking script
merge benchmarking across threads and across compute nodes in benchma…
aa31332 
…rking script
C.A.P. Linssen and others added 30 commits August 16, 2024 13:36
make plot styles consistent
39429b7
make plot styles consistent
e935983
@pnbabu
Merge remote-tracking branch 'origin/nestml_benchmark' into nestml_be…
a177c3d 
…nchmark
@pnbabu
ISI plots for MPI runs
b11e06b
update benchmark plots
1deb2cf
Merge remote-tracking branch 'origin/nestml_benchmark' into nestml_be…
b5f8c0f 
…nchmark
update benchmark plots
0ffcf65
plot runtime data log-log
38ccb83
@pnbabu
Modify the path of benchmark.py in the template
d4f81f5
add K-S distance metric
939c42a
add K-S distance metric
e166be8
@clinssen
update plots
c98b3f3
add KS statistic to benchmarking script
686e0af
Merge remote-tracking branch 'origin/nestml_benchmark' into nestml_be…
3d0f035 
…nchmark
updates to memory plots
6b83ea9
updates to memory plots
d05e989
fix plotting in brunel script
4a06acd
@clinssen
plotting updates in benchmark script
e88b582
@clinssen
Merge remote-tracking branch 'origin/nestml_benchmark' into nestml_be…
16b3e2a 
…nchmark
@clinssen
plotting updates in benchmark script
5e4148f
make all benchmarking panels part of the same figure
f6d6aa4
@pnbabu
Peformance benchmark changes
bde951f
make all benchmarking panels part of the same figures
aad3faa
Merge remote-tracking branch 'origin/nestml_benchmark' into nestml_be…
4d3248d 
…nchmark
@clinssen
make all benchmarking panels part of the same figures
107a760
@clinssen
make all benchmarking panels part of the same figures
1411a18
@clinssen
fix memory plot
3a5070b
@clinssen
fix plots vertical axes
2c00af4
@clinssen
add column labels to performance plot
7d7379d
@clinssen
fix plotting order
34a4a4c
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@pnbabu @clinssen