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Add note to aeif models about refractory period and peculiarities #3296

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9 changes: 8 additions & 1 deletion models/aeif_cond_alpha.h
Original file line number Diff line number Diff line change
Expand Up @@ -103,7 +103,14 @@ and
For the reference implementation of this model, see
`aeif_models_implementation <../model_details/aeif_models_implementation.ipynb>`_ notebook.

See also [1]_.

.. note::

The default refractory period for ``aeif`` models is zero, consistent with the model definition in
Brette & Gerstner [1]_. Thus, an ``aeif`` neuron with default parameters can fire multiple spikes in a single
time step, which can lead to exploding spike numbers and extreme slow-down of simulations.

To avoid such unphysiological behavior, you should set a refractory time ``t_ref > 0``.

Parameters
++++++++++
Expand Down
9 changes: 8 additions & 1 deletion models/aeif_cond_alpha_astro.h
Original file line number Diff line number Diff line change
Expand Up @@ -110,7 +110,14 @@ For implementation details of the adaptive exponential integrate-and-fire neuron
model, see the
`aeif_models_implementation <../model_details/aeif_models_implementation.ipynb>`_ notebook.

See also [1]_.

.. note::

The default refractory period for ``aeif`` models is zero, consistent with the model definition in
Brette & Gerstner [1]_. Thus, an ``aeif`` neuron with default parameters can fire multiple spikes in a single
time step, which can lead to exploding spike numbers and extreme slow-down of simulations.

To avoid such unphysiological behavior, you should set a refractory time ``t_ref > 0``.

Parameters
++++++++++
Expand Down
16 changes: 16 additions & 0 deletions models/aeif_cond_alpha_multisynapse.h
Original file line number Diff line number Diff line change
Expand Up @@ -96,6 +96,14 @@ When the neuron fires a spike, the adaptation current :math:`w <- w + b`.
For implementation details see the
`aeif_models_implementation <../model_details/aeif_models_implementation.ipynb>`_ notebook.

.. note::

The default refractory period for ``aeif`` models is zero, consistent with the model definition in
Brette & Gerstner [1]_. Thus, an ``aeif`` neuron with default parameters can fire multiple spikes in a single
time step, which can lead to exploding spike numbers and extreme slow-down of simulations.

To avoid such unphysiological behavior, you should set a refractory time ``t_ref > 0``.

Parameters
++++++++++

Expand Down Expand Up @@ -155,6 +163,14 @@ Receives

SpikeEvent, CurrentEvent, DataLoggingRequest

References
++++++++++

.. [1] Brette R and Gerstner W (2005). Adaptive exponential
integrate-and-fire model as an effective description of neuronal
activity. Journal of Neurophysiology. 943637-3642
DOI: https://doi.org/10.1152/jn.00686.2005

See also
++++++++

Expand Down
16 changes: 16 additions & 0 deletions models/aeif_cond_beta_multisynapse.h
Original file line number Diff line number Diff line change
Expand Up @@ -113,6 +113,14 @@ When the neuron fires a spike, the adaptation current `w <- w + b`.
For implementation details see the
`aeif_models_implementation <../model_details/aeif_models_implementation.ipynb>`_ notebook.

.. note::

The default refractory period for ``aeif`` models is zero, consistent with the model definition in
Brette & Gerstner [1]_. Thus, an ``aeif`` neuron with default parameters can fire multiple spikes in a single
time step, which can lead to exploding spike numbers and extreme slow-down of simulations.

To avoid such unphysiological behavior, you should set a refractory time ``t_ref > 0``.

Parameters
++++++++++

Expand Down Expand Up @@ -172,6 +180,14 @@ Receives

SpikeEvent, CurrentEvent, DataLoggingRequest

References
++++++++++

.. [1] Brette R and Gerstner W (2005). Adaptive exponential
integrate-and-fire model as an effective description of neuronal
activity. Journal of Neurophysiology. 943637-3642
DOI: https://doi.org/10.1152/jn.00686.2005

See also
++++++++

Expand Down
9 changes: 8 additions & 1 deletion models/aeif_cond_exp.h
Original file line number Diff line number Diff line change
Expand Up @@ -105,7 +105,14 @@ setting V_peak too high.
For implementation details see the
`aeif_models_implementation <../model_details/aeif_models_implementation.ipynb>`_ notebook.

See also [1]_.

.. note::

The default refractory period for ``aeif`` models is zero, consistent with the model definition in
Brette & Gerstner [1]_. Thus, an ``aeif`` neuron with default parameters can fire multiple spikes in a single
time step, which can lead to exploding spike numbers and extreme slow-down of simulations.

To avoid such unphysiological behavior, you should set a refractory time ``t_ref > 0``.


Parameters:
Expand Down
8 changes: 7 additions & 1 deletion models/aeif_psc_alpha.h
Original file line number Diff line number Diff line change
Expand Up @@ -95,7 +95,13 @@ Here :math:`H(t)` is the Heaviside step function and `k` indexes incoming spikes
For implementation details see the
`aeif_models_implementation <../model_details/aeif_models_implementation.ipynb>`_ notebook.

See also [1]_.
.. note::

The default refractory period for ``aeif`` models is zero, consistent with the model definition in
Brette & Gerstner [1]_. Thus, an ``aeif`` neuron with default parameters can fire multiple spikes in a single
time step, which can lead to exploding spike numbers and extreme slow-down of simulations.

To avoid such unphysiological behavior, you should set a refractory time ``t_ref > 0``.

Parameters
++++++++++
Expand Down
8 changes: 7 additions & 1 deletion models/aeif_psc_delta.h
Original file line number Diff line number Diff line change
Expand Up @@ -97,7 +97,13 @@ the value of `J` after a spike.
For implementation details see the
`aeif_models_implementation <../model_details/aeif_models_implementation.ipynb>`_ notebook.

See also [1]_.
.. note::

The default refractory period for ``aeif`` models is zero, consistent with the model definition in
Brette & Gerstner [1]_. Thus, an ``aeif`` neuron with default parameters can fire multiple spikes in a single
time step, which can lead to exploding spike numbers and extreme slow-down of simulations.

To avoid such unphysiological behavior, you should set a refractory time ``t_ref > 0``.

Parameters
++++++++++
Expand Down
13 changes: 13 additions & 0 deletions models/aeif_psc_delta_clopath.h
Original file line number Diff line number Diff line change
Expand Up @@ -93,6 +93,14 @@ For implementation details see the

See also [2]_.

.. note::

The default refractory period for ``aeif`` models is zero, consistent with the model definition in
Brette & Gerstner [4]_. Thus, an ``aeif`` neuron with default parameters can fire multiple spikes in a single
time step, which can lead to exploding spike numbers and extreme slow-down of simulations.

To avoid such unphysiological behavior, you should set a refractory time ``t_ref > 0``.

Parameters
++++++++++

Expand Down Expand Up @@ -190,6 +198,11 @@ References
.. [3] Voltage-based STDP synapse (Clopath et al. 2010) on ModelDB
https://modeldb.science/144566?tab=1

.. [4] Brette R and Gerstner W (2005). Adaptive exponential
integrate-and-fire model as an effective description of neuronal
activity. Journal of Neurophysiology. 943637-3642
DOI: https://doi.org/10.1152/jn.00686.2005

See also
++++++++

Expand Down
8 changes: 7 additions & 1 deletion models/aeif_psc_exp.h
Original file line number Diff line number Diff line change
Expand Up @@ -95,7 +95,13 @@ Here :math:`H(t)` is the Heaviside step function and `k` indexes incoming spikes
For implementation details see the
`aeif_models_implementation <../model_details/aeif_models_implementation.ipynb>`_ notebook.

See also [1]_.
.. note::

The default refractory period for ``aeif`` models is zero, consistent with the model definition in
Brette & Gerstner [1]_. Thus, an ``aeif`` neuron with default parameters can fire multiple spikes in a single
time step, which can lead to exploding spike numbers and extreme slow-down of simulations.

To avoid such unphysiological behavior, you should set a refractory time ``t_ref > 0``.

Parameters
++++++++++
Expand Down
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