Merge branch 'master' into 3.8-develop

nest · Aug 2, 2024 · 11c488e · 11c488e
2 parents 62acd9d + 8ecdfd3
commit 11c488e
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diff --git a/.github/workflows/codeql.yml b/.github/workflows/codeql.yml
@@ -51,7 +51,7 @@ jobs:
 
       # Initializes the CodeQL tools for scanning.
       - name: Initialize CodeQL
-        uses: github/codeql-action/init@4fa2a7953630fd2f3fb380f21be14ede0169dd4f # v3.25.12
+        uses: github/codeql-action/init@afb54ba388a7dca6ecae48f608c4ff05ff4cc77a # v3.25.15
         with:
           languages: ${{ matrix.language }}
           # If you wish to specify custom queries, you can do so here or in a config file.
@@ -61,7 +61,7 @@ jobs:
       # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).
       # If this step fails, then you should remove it and run the build manually (see below)
       - name: Autobuild
-        uses: github/codeql-action/autobuild@4fa2a7953630fd2f3fb380f21be14ede0169dd4f # v3.25.12
+        uses: github/codeql-action/autobuild@afb54ba388a7dca6ecae48f608c4ff05ff4cc77a # v3.25.15
 
       # ℹ️ Command-line programs to run using the OS shell.
       # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
@@ -74,6 +74,6 @@ jobs:
       #   ./location_of_script_within_repo/buildscript.sh
 
       - name: Perform CodeQL Analysis
-        uses: github/codeql-action/analyze@4fa2a7953630fd2f3fb380f21be14ede0169dd4f # v3.25.12
+        uses: github/codeql-action/analyze@afb54ba388a7dca6ecae48f608c4ff05ff4cc77a # v3.25.15
         with:
           category: "/language:${{matrix.language}}"
diff --git a/.github/workflows/nestbuildmatrix.yml b/.github/workflows/nestbuildmatrix.yml
@@ -71,7 +71,7 @@ jobs:
           fetch-depth: 0
 
       - name: "Set up Python 3.x"
-        uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
+        uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
         with:
           python-version: "3.10"
 
@@ -98,7 +98,7 @@ jobs:
           fetch-depth: 0
 
       - name: "Set up Python 3.x"
-        uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
+        uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
         with:
           python-version: "3.10"
 
@@ -130,7 +130,7 @@ jobs:
           fetch-depth: 0
 
       - name: "Set up Python 3.x"
-        uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
+        uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
         with:
           python-version: "3.10"
 
@@ -157,7 +157,7 @@ jobs:
           fetch-depth: 0
 
       - name: "Set up Python 3.x"
-        uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
+        uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
         with:
           python-version: "3.10"
 
@@ -225,7 +225,7 @@ jobs:
           fetch-depth: 0
 
       - name: "Set up Python 3.x"
-        uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
+        uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
         with:
           python-version: "3.10"
 
@@ -252,7 +252,7 @@ jobs:
           fetch-depth: 0
 
       - name: "Set up Python 3.x"
-        uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
+        uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
         with:
           python-version: "3.10"
 
@@ -291,7 +291,7 @@ jobs:
   #         name: "build-${{ matrix.os }}-${{ matrix.cpp_compiler }}-${{ matrix.use }}"
 
   #     - name: "Set up Python 3.x"
-  #       uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
+  #       uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
   #       with:
   #         python-version: "3.10"
 
@@ -318,7 +318,7 @@ jobs:
   #         fetch-depth: 0
 
   #     - name: "Set up Python 3.x"
-  #       uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
+  #       uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
   #       with:
   #         python-version: "3.10"
 
@@ -345,7 +345,7 @@ jobs:
           fetch-depth: 0
 
       - name: "Set up Python 3.x"
-        uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
+        uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
         with:
           python-version: "3.10"
 
@@ -404,7 +404,7 @@ jobs:
           fetch-depth: 0
 
       - name: "Set up Python 3.x"
-        uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
+        uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
         with:
           python-version: "3.10"
 
@@ -433,7 +433,7 @@ jobs:
           fetch-depth: 0
 
       - name: "Set up Python 3.x"
-        uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
+        uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
         with:
           # Using 3.8 because Read the docs does not work with higher versions.
           # See also: https://github.com/nest/nest-simulator/pull/2744
@@ -479,7 +479,7 @@ jobs:
           fetch-depth: 0
 
       - name: Install Conda
-        uses: conda-incubator/setup-miniconda@030178870c779d9e5e1b4e563269f3aa69b04081   # v3.0.3
+        uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca   # v3.0.4
         with:
           auto-update-conda: true
           python-version: "3.10"
@@ -542,7 +542,7 @@ jobs:
           fetch-depth: 0
 
       - name: "Set up Python 3.x"
-        uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
+        uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
         with:
           python-version: "3.10"
 
@@ -757,7 +757,7 @@ jobs:
           fetch-depth: 0
 
       - name: "Set up Python 3.x"
-        uses: actions/setup-python@82c7e631bb3cdc910f68e0081d67478d79c6982d # v5.1.0
+        uses: actions/setup-python@39cd14951b08e74b54015e9e001cdefcf80e669f # v5.1.1
         with:
           python-version: 3.12
 

diff --git a/.github/workflows/scorecards.yml b/.github/workflows/scorecards.yml
@@ -41,7 +41,7 @@ jobs:
           persist-credentials: false
 
       - name: "Run analysis"
-        uses: ossf/scorecard-action@dc50aa9510b46c811795eb24b2f1ba02a914e534 # v2.3.3
+        uses: ossf/scorecard-action@62b2cac7ed8198b15735ed49ab1e5cf35480ba46 # v2.4.0
         with:
           results_file: results.sarif
           results_format: sarif
@@ -71,6 +71,6 @@ jobs:
 
       # Upload the results to GitHub's code scanning dashboard.
       - name: "Upload to code-scanning"
-        uses: github/codeql-action/upload-sarif@4fa2a7953630fd2f3fb380f21be14ede0169dd4f # v3.25.12
+        uses: github/codeql-action/upload-sarif@afb54ba388a7dca6ecae48f608c4ff05ff4cc77a # v3.25.15
         with:
           sarif_file: results.sarif
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -10,7 +10,7 @@ repos:
     rev: v8.16.3
     hooks:
       - id: gitleaks
-      
+
   - repo: https://github.com/pycqa/isort
     rev: 5.12.0
     hooks:
@@ -32,4 +32,4 @@ repos:
     rev: v17.0.4
     hooks:
       - id: clang-format
-
+        types_or: [c++]
diff --git a/README.md b/README.md
@@ -2,6 +2,7 @@
 
 [![Documentation](https://img.shields.io/readthedocs/nest-simulator?logo=readthedocs&logo=Read%20the%20Docs&label=Documentation)](https://nest-simulator.org/documentation)
 [![CII Best Practices](https://bestpractices.coreinfrastructure.org/projects/2218/badge)](https://bestpractices.coreinfrastructure.org/projects/2218)
+[![OpenSSF Scorecard](https://api.scorecard.dev/projects/github.com/nest/nest-simulator/badge)](https://scorecard.dev/viewer/?uri=github.com/nest/nest-simulator)
 [![License](http://img.shields.io/:license-GPLv2+-green.svg)](http://www.gnu.org/licenses/gpl-2.0.html)
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10834751.svg)](https://doi.org/10.5281/zenodo.10834751)
 

diff --git a/doc/htmldoc/.gitignore b/doc/htmldoc/.gitignore
@@ -4,3 +4,5 @@
 auto_examples/
 # Some images are copied over from the source into the doc static.
 static/examples
+# json data is produced at build time by Sphinx
+static/data/filter_model.json